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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/SydneyBioX/clustSIGNAL
Confirm the following by e…
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Hi,
We noticed an issue between reading the `raw` and `filtered` outputs from SpaceRanger that I'm not sure whether `read10xVisium()` could address or not.
I incorrectly thought that the only di…
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Hi,
I'm running Spotclean on the provided test data of adult mouse brain following the vignette. However, the function spotclean() produces a Warning and then stops running:
data(mbrain_raw)
…
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Hello,
related to this issue #118:
unfortunately I keep getting a similar error. Once I call the magic function it sais "Calculating PCA" and then the R session crashes after a while.
```
> libr…
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Hi,
I've been trying to replicate my previous scripts and data pipeline from earlier versions of Seurat. I'm trying to recluster the clusters I found earlier. However, I'm encountering a particular…
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Hi,
Recently, I have been through the book and some tools of the field.( Seurat, STutility , STexampleData, ggspavis)
I was wondering if I miss the part where you explain how to plot with ST pla…
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Thanks for creating the package.
I'm experimenting with `VisiumIO` 0.99.3 to create SpatialExperiment object for Visium HD data.
The dataset that I'm experimenting right now comes from https://…
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Hi,
I am trying to add a high resolution image to my spe object as follows
```
spe
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/kinnaryshah/spatialSimGP
Confirm the following by…
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> visium_kidney = createGiottoVisiumObject(visium_dir = data_path,
+ expr_data = 'raw',
+ png_name = image_name,
+ …