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Hello,
I am trying to use KiloSort2 to sort data which came from recordings of a turtle brain.
I think that the spikes are a little slower then the spikes that are usually being sorted by the algori…
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Hello, my name's Jack and I'm a PhD student in Mike Economo's lab at Boston University. Recently I derived an equation for predicting False Discovery Rate (FDR) from ISI violations in spike sorting th…
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Hello! I am seeking assistance to understand how to edit _create_input_json.py_. I have edited lines 17-23 of the code below, this is a recreation of how I filled in these values:
```
def createIn…
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Running spykingcircus in docker mode (probably in regular mode as well) results in an error if there is a space in the path.
This probably relates to the shell command not putting the path in quote…
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I am loading the file from hard disk (drive E) and running the extractor, is there something wrong with my code in assigning the path for the sorter ?
```
from pathlib import Path
recording_ecog …
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I was getting weird spikes out of simulation, they appeared to be shifted by neuron id. After adding a sort to the `new_ids` set it looks like this is corrected.
https://github.com/genn-team/pynn_ge…
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Thank you for your code and very impressive explanation,
I am a spike-sorting beginner. I have a stupid question, the example shown used a single-channel ncs file. How to handle the multiple chann…
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I think SUA and MUA power are very specific things (A for activity). In particular, they typically refer to power spectrum of high passed filtered LFPs, that is, spikes. MUA without spikes sorting (al…
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Greetings,
Our lab is setting up for Neuropixel recording and I was wondering if you had any suggestions for the recommended GPU for using KiloSort to process that large volume of data. We've not b…
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Hi,
I am confused about the preprocessing chain before running kilosort. In nearly all provided examples, 'highpass_filter', 'phase_shift' and 'common_reference' were run and sorters were called li…