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When
* running the in-mem mode
* with the standard max memory limit
* and a dataset with a long cobs matching (plasmids)
it seems to me that too few cobs instances are being run in parallel, l…
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貼吧活動：(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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**Description**
Hello @rpetit3 ,
We are currently using the `shigeifinder` wf in the bactopia tools, but it stucks for many hours. Please find the logs below.
> (base) gilmansiu3@gilmansiu3-Z49…
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**Description**
After running `bactopia download --build-all envtype conda`, I get an error that the environment cannot be solved.
**Steps to Reproduce**
Steps to reproduce the behavior:
```
(b…
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Hello Matthijs,
Thank you for continuing to maintain and update this great package.
The problem is that as.mo("Candida auris") is wrongly identified as just Candida and is treated as an uncertai…
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After during benchmarking, several processes stalled (see https://github.com/karel-brinda/mof-search/issues/83), I'm getting the following errors after re-running the pipeline:
```
$ make match
s…
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This could substantially improve the COBS part.
I think we already have everything for this:
1. COBS is fixed and tested with the memory mode
2. We already have a mechanism to reduce the sum of i…
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When I run the program with the simplest params
```
$ ./kmers -p ~/github/my/rase-db-spneumoniae-sparc/isolates/28PCJ.fa -k31
```
I get
```
CatactttcctctttaTattgtattgataccaActtgtttgtagacttTtc…
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**Description**
Apologies that I am here again. I really appreciate all the help so far. I have a dataset of ~260 _E.coli_ samples to run, and am trying to turn them around by Thursday. I decided to …
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- [x] check all are created, not just one input