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Hi,
I had a few quick questions about how I should interpret the "Samples ()" columns in my results file. Do these columns just refer to how many samples contained the splicing event in the SJ.out.…
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Hi,
I've looked at this perfect model for detecting the brain tumors and the results was very intresting for me. To be honest, I'm looking for the number parameters of this model. Can you please help…
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is there any way to access this dataset anywhere else?
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Dear Dr. Song,
First off - very exciting approach and really nice system.
I saw your preprint the other day and was interested in applying it to some of the example data that you link to for n…
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Dear Fabian,
Hi Fabian.
I have recently used HD-GLIO to segment tumors in my dataset inputs (t1, t1-ce, t2, t2-flair), and the segmentation worked well. However, I noticed that the resulting se…
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I am dealing with the medical images of size 3000x5000 and have around 1500 images. I cant keep default image size to 600 as in the **config.py (self.im_size = 600)** as it takes long time to train. S…
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Hi InSituType team,
We'd like to use your method for supervised prediction of our cosmx data. I noticed that the reference matrix is not from your precious annotated NSCLC but something like a bulk…
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Hello.
Thank you for developing this amazing resource. I am having some problems with normalizing RNAseq data from TCGA. In brief, I am doing a "sanity check" using breast cancer data subdivided into…
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is it possible for you to share the script of how you converted the raw image intensities to standardized uptake values (SUV) for PET images you mentioned in the paper you referenced (3D Alpha Matting…
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I think it's likely that there is a general expression pattern for how mutated a tumor is. For example, super mutated tumors may have wacky gene expression, solely because they're super mutated and no…