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@andreas-wilm
In your Github usage documentation
```
obam=your-output.bam;
reffa=your-ref.fasta
fq1=your-R1.fq.gz
fq2=your-R2.fq.gz
bwa mem $reffa $fq1 $fq2 | \
samtools fixmate - - | \
…
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I think kraken2 tasks could be sped up greatly with some tweaks to the command: https://github.com/theiagen/public_health_viral_genomics/blob/5a3d1f7510f4c57b8602049469b6d0329ca5c430/tasks/task_taxonI…
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| Name | Description | Size | Format | URL |
| --- | --- | --- | --- | --- |
| World Bank - Light Every Night | Light Every Night - World Bank Nightime Light Data – provides open access to all night…
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https://mp.weixin.qq.com/s/ykiZO9ZxtHb9xRgSx874GQ
ixxmu updated
2 years ago
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**Submitting author:** @chrisamiller (Christopher A. Miller)
**Repository:** https://github.com/genome/bam-readcount
**Version:** 1.0
**Editor:** @lpantano
**Reviewers:** @friedue
**Managing EiC:** A…
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# Header
- [x] Change “About VirusSeq Portal” to “About VirusSeq Data Portal”
- [x] Change “Explore COVID-19 Data” to “Explore VirusSeq Data”
- [x] Make the fonts for both bold
# Footer
- [x] M…
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Description
Sub-lineage of: B.1.617.2
(current lineage designation by Pangolin, no AY. designation yet) with 5
additional mutations. These additional def…
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Hi,
Thanks a lot for the useful tool. When I tried to run "Viral_Track_scanning.R" with COVID-19 data from your paper (GEO Datasets: GSM4339774), it reported the following error right after read al…
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# Bactopia v2 Overview
With tremendous effort by @mxrcon and @abhi18av, the [foundation for migrating Bactopia to DSL2 has been laid out](https://github.com/bactopia/bactopia/pull/228). This transiti…
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I have installed ppanggolin in my ubuntu 18.04.5 LTS 64 bit version computer. I have followed all the instruction and successfully installed ppanggolin. I have checked the version of ppanggolin which…