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Recently, I'm working on viral metagenomics. I identified viral contigs using virsorter2 and then performed binning using vRhyme. Finally I obtained some viral MAGs (vMAGs). CheckV seems could only as…
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Hello folks,
I'm getting this error while trying to run VIRfy.
Preview nextflow mode 'preview' is not supported anymore -- Please use `nextflow.enable.dsl=2` instead.
I'm running the command …
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Hi, I am new to Virsorter2 and DRAMv.
When running DRAMv, I got this error:
DRAM-v.py annotate \
-i /scratch/hdd2/carmen/Metagenomics_16S/Phage/phage_annotation/test2.2/vs2/9968_vs2/for-dramv/…
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Hi,
I'm trying to install and run the pipeline using Singularity on an HPC. The install fails during the PRR-Meta installation process giving me the following error:
```
Error executing process…
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Hi team, it's thrilling to have successfully run VIRify for the first time!
I found the CPU usage is low when running `hmmsearch`, so I'd like to execute multiple VIRfy processes in parallel. Howe…
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Hi,
I've been trying to run WtP for a couple of days now and keep encountering errors that have been challenging to resolve. The latest is:
```
Error executing process > 'pvog_database:pvog_DB'…
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Hi,
The README.md file states:
"We highly recommend to run stable releases, also for reproducibility"
But when I check
https://github.com/EBI-Metagenomics/emg-viral-pipeline/releases
t…
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**Submitting author:** @ParkvilleData (Babak Shaban)
**Repository:** https://github.com/ParkvilleData/MetaGenePipe/
**Branch with paper.md** (empty if default branch):
**Version:** 1.1.5
**Editor:** …
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Hi All,
I'm quite new to Nextflow and encountered an issue which maybe related to Singularity. I tried to run the basic test for the pipeline
```
module load nextflow
module load singularity/…
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```
(aviary-dev3)cl5n007:20220715:~/git/aviary$ aviary --help
......:::::: AVIARY ::::::......
A comprehensive metagenomics bioinformatics pipeline
Metagenom…
wwood updated
2 years ago