-
Hey @luispedro , thanks for using the `argparse2tool` to generate CWL descriptions in https://github.com/luispedro/ngless/tree/master/scripts
However there are no `output` stanzas as `argparse` mod…
-
When trying to work on schemas in this manner it is helpful to have a working implementation before making merging a schema change. For this we have the https://github.com/common-workflow-language/wor…
-
## Feature Request
### Desired behaviour
NextFlow looks like an interesting choice in addition to CWL and WDL.
The way they reference Docker containers is https://www.nextflow.io/docs/latest/…
-
The new feature works for math commands which are completed with no arguments such as
`\sin` and `\int`, but math delimiters are not inserted for commands with arguments such as
`\frac{num}{den}` or…
-
as noted in #1638
This is a follow on to #1540 #1621
-
Hello Toil team,
This is a follow up from https://github.com/common-workflow-language/cwltool/issues/703
I'm still seeing this issue after upgrading `cwltool` to `1.0.20180326152342`
The issu…
-
Evaluate the latest GA4GH WES specification, ask questions, and provide feedback. Also adapt functionality of existing Helium WES implementation to the new WES specification.
Helium is committed to…
-
## Bug Report
The [Swagger UI](https://dockstore.org:8443/static/swagger-ui/index.html) page for Dockstore shows the version as 1.3.0, but the Dockstore API on the [home page](https://dockstore.org…
-
This is the stacktrace:
```
Traceback (most recent call last):
File "/home/thomas.e/.local/lib/python2.7/site-packages/toil/worker.py", line 340, in main
job._runner(jobGraph=jobGraph, jobSt…
-
hi! I'm trying to write a cwl workflow that outputs a directory:
https://github.com/gijzelaerr/vermeerkat-cwl/blob/master/h5toms.cwl#L16
https://github.com/gijzelaerr/vermeerkat-cwl/blob/dir_outpu…