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Hi, I just started using canu, and I'm sorry if this is something obvious, but please help me understand what went wrong.
I'm running canu v1.5 on a grid setup using SGE, which is bootstrapped by c…
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Hi
I just installed canu and tried the test data in the quick start guide. I get this error:
```
----------------------------------------
ERROR:
ERROR: Failed with exit code 133. (rc=34048)…
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Hi
So my mhap overlapper jobs are failing with:
Starting mhap precompute.
Error occurred during initialization of VM
Could not reserve enough space for 67108864KB object heap
Mhap failed.
…
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Dear developers,
Thank you for developing this great software.
According to a previous advice, I've been using the latest code and the option (overlapper=mhap utgReAlign=true) which is much faste…
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Dear developers,
Thank you for developing this great software.
I'm using canu to assemble R9.4 nanopore data in which
total read length is approximately 1.4Gb
The default parameter of canu s…
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# Main content:
Dear developers,
I meet this problem and can't find a solution now.
It occurs in stage 1: correction.
It occurs in substage: bucketize.
The total error log is in the supplem…
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Hi,
I suppose it's something like #54 and/or #73 but I'm a bit lost on how to solve this and resume the canu 1.4 pipeline .
```
Please panic. canu failed, and it shouldn't have.
Stack trace…
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The canu ran ok until the third stage "Assemble", my command is
`canu -p all_pacbio -d all_pacbio genomeSize=1.17g -pacbio-raw all_pacbio.fastq >> 1.log`
and my log file is
```
-- Detected Java(T…
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Hi,
I executed
```
$ canu -p fruit \
-d fruit-auto \
genomeSize=1.8g \
-pacbio-raw /work/lorencm/apps/HINGE/data/fruit/m160705_083016_42229_c101025172550000001823232111041680.fast…
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-l --> hist file and minLength