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s4hts
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HTStream
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
https://s4hts.github.io/HTStream/
Apache License 2.0
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Mac version available on github, via Brew, and on bioconda is outdated
#262
jimmyamcguire
opened
4 weeks ago
0
UMI Support for hts_SuperDeduper!
#261
bnjenner
closed
2 months ago
4
Improved DRAGEN parameter support for SE Reads
#260
bnjenner
closed
3 months ago
0
hts_ExtractUMI: new parameters
#259
bnjenner
closed
3 months ago
0
Issue in Common: Memory Leak in `check_open_r` (not closing file)
#258
dstreett
opened
3 months ago
2
New Tool: hts_ExtractUMI
#257
bnjenner
closed
3 months ago
0
bumping google test to 1.21.1 to avoid compilation errors
#256
joe-angell
closed
1 year ago
0
munmap_chunk(): invalid pointer error
#255
jrlyen
closed
1 year ago
3
"no such file or directory" error
#254
Emmashipman
opened
1 year ago
2
Order of input files to hts_SeqScreener changes hits reported when R1/R2 lengths differ
#253
AstrobioMike
opened
1 year ago
0
Remaining adapter sequence
#252
cdermita
opened
1 year ago
0
Compiling from source fails on Ubuntu 22.04.1
#251
amphioxus
closed
1 year ago
2
quality range not checked leading to undefined behavior
#250
joe-angell
closed
1 year ago
3
pointer error in hts_Stats
#249
najoshi
closed
1 year ago
1
Update read.h
#248
joe-angell
closed
2 years ago
0
Fix primer ids
#247
msettles
closed
2 years ago
1
Add to CutTrim, trim to length from 5' or 3'
#246
msettles
opened
2 years ago
0
citation?
#245
Tgrandis
closed
2 years ago
2
hts_LengthFilter is missing from the documentation!
#244
samhunter
opened
3 years ago
0
How to cite HTStream? :-)
#243
mickey-spongebob
closed
3 years ago
2
Version incorrect and CMAKE_PREFIX_PATH not working
#242
najoshi
opened
3 years ago
5
hts_Primers - error message
#241
adamerum
closed
3 years ago
4
Fixes #239 space at end of id string
#240
joe-angell
closed
3 years ago
1
hts_Primers doesn't seem to read multi-fasta files correctly
#239
samhunter
closed
3 years ago
0
SuperDeduper ignoring reads
#238
channsoden
closed
2 years ago
6
Is "percentage-hits" calculated properly for SeqScreener?
#237
samhunter
closed
3 years ago
1
Fix tags in discard
#236
msettles
closed
3 years ago
1
Flag use
#235
emmadoughty
closed
3 years ago
1
fixes ntrimmer bug basepair output growing in size
#234
joe-angell
closed
3 years ago
2
update hts_Primers, bug and update
#233
msettles
closed
4 years ago
0
-m (minLength) option removed from hts_QWindowTrim, but does not exist in hts_CutTrim
#232
marade
closed
4 years ago
3
Feature downgrade actually, remove -a option from SuperD
#231
msettles
opened
4 years ago
0
fixes #229 input counts fix for primer
#230
joe-angell
closed
4 years ago
0
hts_Primer doesn't report fragments and basepairs_in
#229
msettles
closed
4 years ago
0
stats json output now list of objects
#228
joe-angell
closed
4 years ago
0
hts_SeqScreener enhancements for bigger references
#227
samhunter
opened
4 years ago
0
threaded overlapper
#226
joe-angell
closed
4 years ago
0
generating compile commands for fun and proffit
#225
joe-angell
closed
4 years ago
0
Stats regression
#224
joe-angell
closed
4 years ago
0
adds hts exception for improved error messaging
#223
joe-angell
closed
4 years ago
0
make "unhandled" errrors that are expected to have improved messaging
#222
joe-angell
closed
4 years ago
0
Stats file format issue
#221
joe-angell
closed
4 years ago
6
bump version for bug fix release
#220
samhunter
closed
4 years ago
0
forgot to add counter input for lenght filter
#219
joe-angell
closed
4 years ago
2
bumped version number
#218
samhunter
closed
4 years ago
0
Remove all occurrences of ibest and rename to s4hts
#217
msettles
closed
4 years ago
0
Add concept of Tag to attach information to the read ids, needed for Primers and some future ideas.
#216
msettles
closed
4 years ago
4
N-trimmer might have an overflow on Right bp trim
#215
msettles
opened
4 years ago
3
adding uncompressed regression
#214
joe-angell
closed
4 years ago
0
Regression script
#213
joe-angell
closed
4 years ago
2
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