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Hi,
Peptide shaker is stalling on me due to memory issues on both gui and cli versions. Sometimes it gives me an error, but sometimes the java binary utilization drops to 0% CPU with no error and n…
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Hello,
Is it valuable to apply hyper score threshold to filter the most significant PSM spectra?
Let's say, I get ~3000 PSMs with p-value < 0.01. Will it be useful to stringen selection with hy…
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Hi,
I uploaded pseudo* cross-link data and some results are missing. I can image that it is some kind of filtering problem (homo-multimer?). In xiSpec I can see all the results (https://spectrumvie…
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I tried to run the following script, but getting errors (see below)
mono /home/WorkDir/Software/MaxQuant/bin/MaxQuantCmd.exe mqpar.xml
Assembling unidentified peptides
Finish protein assembly
Up…
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Dear Felipe,
using the philosopher 1.5.1 the following error code occurs when I try to filter SpectraST search results:
Cannot decode packed binary. strconv.ParseFloat: parsing "Normal": invalid…
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Hi Felipe,
I tested the multi-experiment report coupled with Philosopher FreeQuant. There are three fractions from Gygi's data. Rest of the settings are the same as those from [https://github.com/N…
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# Abstract
Metaproteomics is the analysis of proteins in samples composed of multiple organisms. One major use case is the investigation of the functional composition of a sample. Multiple tool…
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Good afternoon,
Sorry if I disturb you with some primitive issue. I have got an mgf file, from which Mascot search results in different peptide assignments than PeptideShaker, with the very same sett…
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Interesting observations with respect to pancore publication:
- Clostridium botulinum: example of genomes that are so-called complete, but are not
- ???: example of incorrect taxonomic identification …
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