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I was trying to use h5read to load a single cell RNA seq dataset, from 1.3 million cells, stored as a sparse matrix. Because there're so many cells, there're 2.5 billion non-zero values, which will ma…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
alevin
**Describe the bug**
I am trying to use Alevin to quantify a single cell RNA-Seq 10x Genomics CHROMIUM …
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{
"body": {
"sections": {
"section": [
{
"@id": "sec1",
"section-title": "Introduction",
"para": [
{
…
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In your statistical_testing analysis, following IRS normalization, the result of the decide tests function looks you might be overfitting your data.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC46…
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Hello,
I would like to know if it is possible to set this option found in the manual of RSEM:
--strandedness
This option defines the strandedness of the RNA-Seq reads. It recognizes three values…
ghost updated
5 years ago
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I was a bit overwhelmed to see a sort of full-page entry for the first project listed. Once we have 20+ benchmarks listed here it's going to be pretty unwieldy.
Could we perhaps have entries trimme…
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Hi
I am trying to test SCnorm on a single cell data set from 10x genomics using the following UMIdata command:
"DataNorm
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I have installed and successfully run the test. I am now trying to use 'tracer build' to create a new resource for my organism of choice (Btau). However, I keep getting the error I keep getting the er…
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Hi Clint,
we had an issue before (#32) where the same `Sample_ID` caused issues, even if the lanes were different.
Now we are having the same issue, but without specifying lanes. This time it's …
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Hello and thanks a lot for the nice and very practical tool.
I have a data set of single cell RNA seq data produced by 10X genomics technology. The data set is a combination of cells that are comi…