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Thank you for a beautiful piece of work that is certain to have a long lasting impact on this nascent field! I look forward to carefully examining it and expect to find many applications for your meth…
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A couple separate issues here.
1. Where and how will phenotype propagation get implemented going forward? At present propagation seems to be implemented via cypher queries [here](https://github.com/…
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# Proposal: In the Agenda component, automatically retrieve preferred timezone for the current user
## Rationale
Retrieving events from the calendar using the current user's preferred timezone i…
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I am currently using `vg map` to map reads from a yeast strain to my vg graph using the following command:
`vg map -if NCYC1006_trimmed_sorted_interleaved.fastq -x wholegenome.xg -g wg.gcsa > ncyc100…
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Hello! I've found two types of performance issues in your program:
- `batch()` should be called before `map()`.
- `tf.Session` being defined repeatedly leads to incremental overhead.
You can m…
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When I run gene module analysis on my data, I get gene modules with highly uniform expression score values throughout UMAP space and only non-zero expression (see photos). So does another colleague in…
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I have vcf (attached). At locus 3619 it shows 'AT' in REF field and 'TT,AA' in ALT field. To my understanding Vg should show three paths i.e. AT, TT & AA. However, it shows four paths instead i.e. AT,…
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The official Python/R/JS clients support the openEO-way of OIDC based auth out of the box.
But sometimes we have use cases or clients that work from a different stack, e.g. Java, C#, ... and then it…
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I love the idea. I was thinking however to avoid naming collisions I might need to use namespaced keywords.
For example, I found another cool library that generates API and basic type conversions fr…
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Occasionally a user will end up on a page for a disease, phenotype, etc that our SciGraph instance knows nothing about, for a variety of reasons. For example, currently we don't have orphanet loaded i…