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I find that your github of data file have 473 genome sequences for primary data, and 1602 genome sequences for secondary data, but your paper has mentioned 452 and 1603, respectively, and I do not kno…
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Hey,
unfortunately I can not compile telseq successfully on CentOS servers.
It seems that libraries are statically linked as the compiled executable is always showing following error:
"Telseq/telse…
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Shouldn't these terms be under GO:0098019 virus tail, major subunit:
GO:0098027 virus tail, sheath- the definition should specify myophage
GO:0098028 virus tail, shaft
GO:0098026 virus tail, tube-…
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why they are man "U" in the sequences files?
@evogytis, this should be "T", unless you are direct sequencing the RNA.
ghost updated
5 years ago
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Hi Hajk-Georg
I am trying to retrieve various reference genomes of viruses held in Genbank, or more specifically NCBI's RefSeq database.
whilst biomartr 0.7.0 seems to work well for most taxons…
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Here is an example of a plasmid that went through the adaboost classifiers when you integrated the plasmid data. Note the declaration of "susceptible". This tool is trained on whole genome data, so…
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Dear Derrick,
I have installed jellyfish version1.1.11. to build the custom database with fungi, bacteria, and viruses. I followed the instructions in adding libraries to the library folder.
While …
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Hi,
I am having a similar issue to some of your other users, in that I am getting the following error message:
Something went wrong with the connection to: ftp://ftp.ncbi.nlm.nih.gov/genomes/al…
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Is it possible for someone to give me the strict definitions for the 'Best Hit' and 'Weight' variables seen in the Pathoscope results? I can't find them in the docs or anywhere. Thank you, Joe.
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Hi, I am wondering what the memory requirements are for searching against very large database (500GB - 1 TB)? On the query side I can do the splitting but splitting the database would produce less tha…