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- [x] Rename spect-intensity-corr => Aramis Spectral intensity correlation
- [x] Rename spect-peaks => Aramis Spectral speaks analysis
- [x] Add device selection menu to before number of shots, Devi…
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Hi again.
Today, I installed metaGT on our machine using `git clone`.
After installing it, I tried to test the minimal dataset described in README - 'Quick Start' - 4, but it did not work.
``…
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Hello,
First, thank you for creating this great documented pipeline.
Second, I have a few questions about the proccess of the data:
1. in the paper it was written that : "Fastq files were then use…
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When running very large sample BAMs through call-sSNV, it likely that the pipeline would fail because of default resource configurations.
Although the `base_resouce_update` function in `template.co…
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Hello,
I have 10x data that I have initially analyzed using cell ranger and scanpy and I was now starting the analysis with velocyto.
I have performed counting on cellranger output files and then co…
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Using current conda envrinoment (conda_env.yaml), the single-cell pipeline on branch `feature_cellranger_multi` fails due to problems with csv-table directive path.
```
RuleException:
SystemMessage…
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**Summary:** A non-developper user could launch analysis/preprocessing pipeline locally on local data.
**Description:** A simple user must be able to launch a software (like Brainvisa) with UI, to …
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**What is this request referring to?**
CDS variant
**What is the name you would like SO to give the term?**
CDS_variant
**What is the definition that you would like for this term?**
A variant…
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### Title
EEL-Hack: Learning to develop an mTRF pipeline with eelbrain
### Leaders
Noemi Bonfiglio
Vincenzo Verbeni
### Collaborators
Nan
### Brainhack Global 2024 Event
Brainhac…
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Continue with the image analysis pipeline, explore more the CNN model that was used, implement different dimensionality reduction algorithms and clustering methods. Also explore the possibility of per…