bihealth seasnap-pipeline issues

bihealth / seasnap-pipeline

SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline

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issues

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enable `seasnap-de` with simple count table as input

#30 bobermayer opened 7 months ago
0
seasnap-mapping does not run for some in path configurations

#29 january3 opened 8 months ago
1
Rerun STAR if sample_info stranded filed is changed

#28 Nicolai-vKuegelgen opened 10 months ago
0
Changes in sample_info 'stranded' field to not trigger rerun of STAR mapping

#27 Nicolai-vKuegelgen opened 10 months ago
0
DE html report bug

#26 AndranikIvanov opened 11 months ago
2
RNA-SeQC strandness issue

#25 AndranikIvanov closed 12 months ago
0
adapter trimming

#24 AndranikIvanov opened 1 year ago
0
Support for 3' tagged RNA-seq

#23 ericblanc20 opened 1 year ago
0
Benedikt update

#22 bobermayer opened 1 year ago
0
Benedikt update

#21 bobermayer closed 1 year ago
0
Fail to install - channel priority issue

#20 eudesbarbosa opened 1 year ago
1
Add support for better adapter trimming, umis & udis

#19 ericblanc20 opened 1 year ago
0
Added profiles for snakemake job submission

#18 ericblanc20 closed 1 year ago
1
Outdated installation instruction

#17 ErikaZ95 opened 2 years ago
0
single cell pipeline fails at rule all due to problem with "csv-table" and snakemake version

#16 mmilek opened 2 years ago
3
mapping pipeline fails at infer experiment rule due to missing pysam libraries

#15 mmilek opened 2 years ago
0
Feature cellranger multi mm

#14 mmilek closed 1 year ago
1
Replace DRMAA

#13 messersc opened 2 years ago
0
Overhaul software management

#12 messersc opened 2 years ago
1
--config file_name="..." doesn't work if DE_config.yaml and covariate_file.txt are not present

#11 january3 opened 2 years ago
1
Star breaks down with new installation

#10 AndranikIvanov opened 2 years ago
1
Test issue

#9 january3 closed 2 years ago
1
Standardise code: imports and style

#8 eudesbarbosa opened 3 years ago
0
Add issue template

#7 eudesbarbosa opened 3 years ago
0
Move R code away from snakemake files

#6 eudesbarbosa opened 3 years ago
0
Clean up branches

#5 eudesbarbosa opened 3 years ago
0
Version info storage

#4 eudesbarbosa opened 3 years ago
0
Slow conda installation

#3 eudesbarbosa opened 3 years ago
1
Expand git ignore list

#2 eudesbarbosa opened 3 years ago
0
Cleanup start: merge eric to master_rc

#1 ericblanc20 closed 2 years ago
1