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GCN4 is antibody recognizing GCN4pep peptide. The paper
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252608/
uses GCN4pep to tag proteins and GCN4-GFP fusion to detect it.
GCN4 seems to…
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There is no GO term for this.
Currently it is an exact synonym of
GO:0006626 JSON
protein targeting to mitochondrion
Biological Process Definition (GO:0006626 GONUTS page)
The process of di…
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Be able to generate both length statistics (N50, total, longest, shortest, etc), and actual sequences for at least
* mRNA
* protein
* pre-mRNA
* introns
* exons
and break the above down into a…
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What is reported in github is not pseudo-log-likelihood:
https://github.com/ntranoslab/esm-variants/blob/main/esm_variants_utils.py#L90
Pseudo-likelihood requires masking each position one-by-one,…
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Dear all,
Thanks for the development of this nice tool. We ran it on our dataset of serum samples analyzed with SomaLogic v4.1 data in 130 patients.
We did get results but also many of the org…
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and ('has plasma membrane part' some 'low affinity immunoglobulin gamma Fc region receptor II')
and ('has plasma membrane part' some leukosialin)
These proteins haven't been identified …
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Hello, I am trying to build a database from the NCBI nr FASTA (707338897 entries) for more extensive protein search. I have tried to split up the FASTA into smaller chunks (about 250 entries per run) …
yzlwk updated
4 months ago
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Scenario:
A tool can work on a subset of regular input, but the input is not already available as multiple files (and therefore `scatter` would not be useful)
One can manually add steps to split the…
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Hi, I have a problem with it. In my vcf file ,there are snps in those proteins. But, the message remains no snps, what is point? Thank you! No SNPs in >=1000 contiguous codons. If this was unexpected,…
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```
import os
import pandas as pd
import csv
import oddt
from oddt.scoring.functions import RFScore
oddt.toolkit = oddt.toolkits.rdk
rf = rfscore(version=1, n_jobs=-1)
# rf.load('/path/to/…