issues
search
flatironinstitute
/
deepblast
Neural Networks for Protein Sequence Alignment
BSD 3-Clause "New" or "Revised" License
107
stars
18
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error While Downloading DeepBLAST Model and Database
#162
khatrics16
closed
1 month ago
1
Model download link failed
#161
yuanwenguang666
closed
1 month ago
2
Pretraind model download
#160
gbrsales
closed
3 months ago
7
Feasible approach to build a large database
#159
yzlwk
opened
4 months ago
1
Fixing CPU compatibility
#157
mortonjt
closed
4 months ago
0
TM-score calculation for DeepBlast
#156
zh-qifan
closed
5 months ago
4
SW_cuda modual
#155
Zhu-Siqi
opened
6 months ago
8
Unexpected keys in state_dict when I run this code on cpu
#154
liaojf24
closed
7 months ago
3
Questions about evaluation metrics for sequence alignment
#153
hughplay
closed
3 months ago
4
After entering the command line, the program keeps running without any result.
#152
Aurorajwy
closed
3 months ago
10
RuntimeError: The NVIDIA driver on your system is too old
#151
sevengo8378
closed
8 months ago
3
Where is the structure alignment output?
#150
echovv
closed
8 months ago
2
Deepblast model confusion
#149
wangy9711
closed
1 month ago
1
ImportError: cannot import name 'LightningAligner' from 'deepblast.trainer' for deepblast and AttributeError: 'tuple' object has no attribute 'strip' for tm-vec
#148
Zjianglin
closed
10 months ago
12
sw: updates regression tests to match bugfix from 81ac6e3
#147
blackwer
closed
10 months ago
1
Smith-waterman test broken
#146
mortonjt
closed
10 months ago
1
numba: fix deprecation problems and suppress performance warnings
#145
blackwer
closed
4 months ago
2
updates to load method
#144
mortonjt
closed
10 months ago
1
Running time for large query sequences
#143
Citugulia40
closed
10 months ago
1
Running time for searching query
#142
Citugulia40
closed
11 months ago
0
Encountering an Issue While Building a Queryable Protein Sequence Database
#141
pengjk689
opened
11 months ago
2
mat1 and mat2 must have the same dtype
#140
QUEST2179
opened
11 months ago
1
DeepBLAST issue with model load
#139
mortonjt
closed
10 months ago
3
cannot import name 'LightningAligner' from 'deepblast.trainer'
#138
meltzj
closed
10 months ago
2
Pass the device in load_model to Neural aligner
#137
benjamin-kroeger
opened
1 year ago
1
Consistent usage of 'cuda' or 'gpu'
#136
benjamin-kroeger
opened
1 year ago
0
Bump tornado from 6.2 to 6.3.2 in /ci
#135
dependabot[bot]
opened
1 year ago
0
Bump requests from 2.28.1 to 2.31.0 in /ci
#134
dependabot[bot]
opened
1 year ago
0
Bump mpmath from 1.2.1 to 1.3.0 in /ci
#133
dependabot[bot]
opened
1 year ago
0
fix typo when indexing into gap scores in forward pass
#132
fymue
closed
1 year ago
2
No 'LightningAligner' can be import
#131
Ravy-LFL
closed
1 year ago
7
Inference improvements
#130
mortonjt
opened
1 year ago
0
Fixing needleman-wunsch spelling. easier model loading
#129
mortonjt
closed
1 year ago
0
Version 1 update
#128
mortonjt
closed
1 year ago
0
Deprecated scripts
#127
mortonjt
opened
1 year ago
0
Notebook update
#125
mortonjt
closed
1 year ago
0
Updates to simulations
#124
mortonjt
closed
1 year ago
0
Bump protobuf from 3.20.1 to 3.20.2 in /ci
#123
dependabot[bot]
opened
1 year ago
0
Bump werkzeug from 2.2.2 to 2.2.3 in /ci
#122
dependabot[bot]
opened
1 year ago
0
Bump numpy from 1.21.6 to 1.22.0 in /ci
#121
dependabot[bot]
opened
1 year ago
0
Bump ipython from 8.7.0 to 8.10.0 in /ci
#120
dependabot[bot]
opened
1 year ago
0
Events files
#119
mortonjt
closed
1 year ago
0
Preprocessing steps
#118
mortonjt
closed
1 year ago
1
Updated metrics
#117
mortonjt
closed
1 year ago
1
Parsers
#116
mortonjt
closed
1 year ago
1
Adding option to run smith waterman
#115
mortonjt
closed
1 year ago
1
Smith waterman
#114
blackwer
closed
1 year ago
2
Last minute fixes to pdb metrics
#113
mortonjt
closed
1 year ago
0
DeepBLAST align method not working
#112
mortonjt
closed
1 year ago
2
Uploading new alignment metrics and pdb parser
#111
mortonjt
closed
1 year ago
3
Next