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Noticed when working with the io of transformations and fixed in https://github.com/scverse/spatialdata/pull/100 (gonna close the issue when the pr is merged), but worth mentioning the bug here so tha…
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After the planned io refactoring this problem will disappear. So not fixing this bug now, just tracking that we know it exists.
Currently if we try to delete a table we may get an error like this:
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Hello team!
While working on https://github.com/conda-forge/spatialdata-feedstock/pull/1
We noticed that the following packages are imported directly in code but not declared as dependencies in …
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Using `scvi.data.read_10x_atac(folder)` with files generated through the multiome pipeline throws the following error when using the `atac_peaks.bed` file as the `peaks.bed` file -
```
ParserErro…
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### Please describe your wishes and possible alternatives to achieve the desired result.
We should have a utility available for creating a sparse dask array from a sparse dataset.
Basic imp…
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### What kind of feature would you like to request?
Additional function parameters / changed functionality / changed defaults?
### Please describe your wishes
It would be nice to have a more in dep…
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Hello, I am a PhD student working on single-cell analysis. I got hired two months ago, I have to move the analysis from R in Python, so I downloaded directly the .ipynb file in my laptop with the data…
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**Describe the bug**
ir.tl.ir_query fails with error 'ValueError: max_workers must be greater than 0'
Hi,
I am trying to query my TCR data (29k TCRs) against VDJdb using the following code:
…
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### Is your feature request related to a problem?
Hi @zktuong and @DennisCambridge,
the new scverse AIRR data structure [is out](https://github.com/scverse/scirpy/issues/327#issuecomment-15000146…
grst updated
10 months ago
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**Describe your question**
Hello everyone,
I saw decoupler is available with the bioconda channel, I would like to ask whether you'd be open to switching to conda forge, since most other scverse pac…
wxicu updated
9 months ago