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Hi, @YunDeng98,
I have three questions about the usage of SINGER:
1. I have simulated a very short sequence (2Kb) and want to run the ARG inference for the entire sequence instead of a specific…
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## Bug Report
### Affected tool(s)
LiftoverVcf
### Affected version(s)
- [x] Latest public release version [3.1.1] (GATK 4.5.0.0)
### Description
This was discovered in trying to debug #…
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Hi, I'm analyzing HLA PacBio Long-read amplicon (https://github.com/PacificBiosciences/DevNet/wiki/HLA-Multiplexed-GenDx-Amplicons-HLA-A-,-B,--C,--DQB1,-and--DRB1)
I used minimap -ax pacbio for ali…
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Would it be possible to add the number of samples in the v4.0 exomes subsets (UKB, non-UKB) to the browser? https://docs.google.com/spreadsheets/d/1Nql3eV1WpOwrtjdegNL9pC-5KiYImpvDhHUvLEvmGik/edit#g…
ch-kr updated
6 months ago
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Hello lima,
I'm trying to run PureCN with NormalDB, but I get Error:
INFO [2024-03-11 20:23:58] PureCN 2.8.1
INFO [2024-03-11 20:23:58] ------------------------------------------------------------
…
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For context, see https://github.com/broadinstitute/2021_09_01_VarChAMP/issues/5#issuecomment-1642753159 and the comments that follow
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Without specific alleles, how can we know which mutant is right? (for multiallelic snps).
We need to add REF and ALT allele columns to the bed file, and use that in the workflow.
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**Is your request related to a specific disease? Please describe.**
[DOID:0050156](http://www.disease-ontology.org/?id=DOID:0050156)
Was 'idiopathic pulmonary fibrosis' is now 'interstitial lung dis…
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Initial reports can be seen from https://github.com/ggerganov/llama.cpp/pull/8227
> [!IMPORTANT]
> A note for everyone: if you think there's a bug in llama.cpp tokenizer, please make sure to tes…
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Hello, I'm trying to run plink-qc.nf on my Linux HPC cluster with:
nextflow run -c my_nf.config /Users/mchiment/.nextflow/assets/h3abionet/h3agwas/plink-qc.nf -profile sgeSingularity --samplesheet…