popgenmethods SINGER issues

popgenmethods / SINGER

Sampling and inference of genealogies with recombination

MIT License

24 stars 4 forks source link

issues

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AssertionError: assert t >= min_time

#27 hanyoupan opened 4 days ago
1
Converting to tskit format: file not found

#26 LuisGFdez opened 1 week ago
0
High r/m error, branch assertion failed

#25 Uthara28 opened 3 weeks ago
0
Generalize recombination map support to all scripts

#24 dcdehaas opened 1 month ago
0
Correspondence between the positions in SINGER's output and the positions in the input VCF file

#23 jitang-github closed 1 month ago
6
Cannot find compute_pairwise_coalescence_times.py

#22 Luker121 opened 2 months ago
4
Understanding parallel singer errror

#21 mehakmadhura opened 4 months ago
2
Understanding the output file names

#20 mehakmadhura closed 4 months ago
0
Mapping sample indices in outputs to inputs

#19 pmckenz1 closed 4 months ago
2
multiple trees sequences generated

#18 mehakmadhura closed 4 months ago
4
Inferring mutation times

#17 sylviah23 closed 4 months ago
2
Correspondence between nodes and individuals

#16 TymekPieszko opened 5 months ago
3
Assertion `ws > 0' failed.

#15 baozg opened 5 months ago
13
vcf from vg deconstruct cannot work

#14 baozg closed 5 months ago
8
`-resume` flag fails because `ARG.bin_size` is never set

#13 nspope opened 7 months ago
9
Auto-debug issues occurred with the custom VCF input file

#12 kirifuji-nagisa opened 7 months ago
0
Set `tables.mutations.parent` column when converting to tskit

#11 nspope opened 7 months ago
4
Returning a "full ARG"

#10 kitchensjn opened 7 months ago
11
Auto-restart makes it less obvious when parallel jobs are failing

#9 nspope opened 7 months ago
10
Different numbers of alleles in input VCF and output treeSequence files

#8 dandanpeng closed 7 months ago
6
Interpreting parallel SINGER Output: Time Units and Mapping Nodes to VCF IDs

#7 santiago1234 closed 7 months ago
2
Scalability of Singer

#6 dandanpeng closed 7 months ago
1
Auto-debug failed for customized VCF input data

#5 dandanpeng closed 7 months ago
6
Incomplete File Output with SINGER

#4 santiago1234 closed 7 months ago
9
releases + static binaries on GitHub

#3 grenaud opened 8 months ago
1
Extra samples silently appended to haploid VCFs

#2 nspope opened 9 months ago
1
Output labeling expected by convert_long_ARG.py

#1 nspope closed 9 months ago
2