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The ExTASY log at: https://gist.github.com/ashkurti/7bd57dafc1195d7db17d
In addition to errors similar to Issue #128, I am afraid, I do not see any files that have been created on Stampede and then t…
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**Issue by svlandeg**
_Fri Oct 17 10:12:35 2014_
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cf. #198, needed for osmotic use-case: phosphorylation_site (e.g. diamond shaped node) and kinase_function (border around node?)
TODO also in …
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A few things I've noticed in Chromosome View...
DOCK NAVIGATION BUTTONS
- Chromosome Icon isn't green when we're on chromosome view. Here's a screengrab:
![screenshot 2013-11-14 17 48 47](https://f…
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Hi everyone,
I've been trying to run the test suite after installing metAMOS from the git clone of 1.5rc3.
```
$ git clone --branch "v1.5rc3" https://github.com/marbl/metAMOS.git
$ mv metAMOS/ metAM…
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Hi all.
I am currently trying to use metamos on my university HPC facility. I am receiving the following error when during the find ORFs stage.
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************************_ERROR**_**************…
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Implement a sequence diagram module in BioJava3 by re-engineering the code of [RCSB PDB Sequence Diagram](http://code.open-bio.org/RCSB_SequenceViewer/?root=biojava). While the current RCSB PDB Sequen…
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I was thinking of building a file containing molecules and the associated biological data however I'm finding difficult to identify all the molecules that have been made on the project, whether there …
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I've written/collected some text for the About page on the web site. You can see that it's organized into subsections; a lot of it is taken from either the LMU symposium abstract or 402 presentation …
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I was originally planning to implement PathwayView with Cytoscape.js. However, many Reactome pathway diagrams contain bent edges, i.e. edges that are composed of multiple straight lines with different…
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Does minimum-image distance computation re-image molecules, or individual atoms? I couldn't find this detail in the current user or developer manuals.