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It might be time to think about instating logical definitions so that reasoning can be implemented to improve ontology maintenance.
@jseager7 @CuzickA Maybe we can work together to get logical …
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We are trying to add support for multiple genomes as to start this project was only working for human GRCh38.
Work has been done at the loading step on Apr 5, 2022 to support on top of human GRCh38…
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Based on both NCBI and Mihara et al. (2016), plant associated genomovirus 3 is associated with the genus _Cynodon_, which is a fish. _Cynodon_ is also a genus for a grass, which is an unfortunate coi…
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Hi, I am trying to build my own Sourmash LCA database based on NCBI, SILVA, or Greengenes databases for taxonomic classification for my k-mer hash dataset (e.g. 7-mer) computed from 16S rRNA gene sequ…
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| TestField | Value |
| ----- | ----- |
| **GUID** | 431467d6-9b4b-48fa-a197-cd5379f5e889 |
| **Label** | AMENDMENT_SCIENTIFICNAMEID_FROM_TAXON |
| **Description** | Proposes an amendment to the v…
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Looking forward to collaborating on this! I just forked over the repo. I'm having trouble finding the fasta files used for training/testing the models.
Is the main goal to classify Eukaryotic c…
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I worked a bit on the labelling matching with ENA / NCBI as I had a lot of mismatch issues with the development of the FAIR Data Station. I forked the repo and did an analysis on the terms in MIxS and…
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Hello,
I am currently trying to use SIDR to detect contaminants in a few cnidarian genomes I am working with. From reading the publication for this program I assumed there would be a way to use two…
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Meta-issues for database-related experimental design discussions
- [x] How many genomes?
- [x] Which genomes to select?
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# What are the minimum set of terms which do we need to document Interactions?
## Identifiers (ID's)
- One ID for the Interaction record: `dwc:eventID` or `dwc:resourceRelationshipID`
- Two ID'…