-
Running svaba on Terra/Firecloud, we have troubles at this step of `svaba run` for >30X Tumor/Normal WGS (from the logs)
```
...vcf - reading in the breakpoints file
...vcf sizeof empty VCFEntryP…
-
Hi,
I need to run BaseRecalibrator as a part of the preprocessing of my RNAseq bam files before variant calling. But I experience difficulties with memory! Here is the error I get:
```
22:30:2…
-
On macOS, iOS and iPadOS, [Apple provides a pretty nice range of voices](https://github.com/HadrienGardeur/web-speech-recommended-voices?tab=readme-ov-file#macos) across various languages and regions.…
-
Hi!
I used vg chunk to extract subgraphs from a pan-genome graph and then used vg deconstruct to obtain VCF files for both the pan-genome graph and the subgraph. However, I noticed that the VCF fi…
-
Hello I'm using akeneo 3.2.59
I have a catalog of 12 thousand common product models and about 100000 products
I'm trying to edit products attribute values via bulk action but I'm getting an erro…
-
I would like to call a on a hint database from a tactic and let a Hint Extern in that database modify the current goal, and then continue processing the modified goal in the calling tactic. So pehraps…
-
Linux provides a variant of the the memory management code for non-MMU systems (`mm/mnommu.c` in the Linux tree). We could use that with LKL but it does not provide support for `MAP_FIXED`, which Jav…
-
@dasmoth, many thanks for the work on coordinate mapping #82.
I observed that in Dalliance's implementation, coordinate mapping is not applied to sequence tracks (`2bit` or `DASSequence`), but only t…
ymen updated
10 years ago
-
HI,
I am trying to call variants from a gam file as per the "Whole genome calling and genotyping" wiki page.
I have constructed and indexed the graphs (not containing haplotype information) as…
-
Biobambam2 is an incredibly useful package and it seems like I am constantly discovering new features and applications. It would be helpful if the readme had a short description or if there were a des…