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https://mp.weixin.qq.com/s/IKTi7Nb76IU6nE6e-pwbiw
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Dear Professor Yu,
i recently meet the problem with 'enrichKEGG()' or 'createKEGGdb::create_kegg_db()' method, which cannot correctly get the pathway map, could it be a bug form the download_KEGG {cl…
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Hi there,
In the Introduction to SCTransform, v2 regularization tutorial (https://satijalab.org/seurat/articles/sctransform_v2_vignette.html), FindMarkers(setting assay = "SCT").
But, in the I…
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https://mp.weixin.qq.com/s/sZJPW8OWaLNBiXXrs7UYFw
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The specific error is as follows:
import tacco as tc
Traceback (most recent call last):
File "", line 1, in
File "/home/baism/anaconda3/envs/TACCO_env/lib/python3.9/site-packages/tacco/__in…
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Hi,
The problem i am facing is that the treeplot does not have any labels. I have used treeplot on this same data before and it worked perfectly and sets were labeled. Now I cannot produce the plot…
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I run jcvi on the macos
when run the command 'python -m jcvi.compara.catalog ortholog grape peach --no_strip_names' ,encounter an error 'ERROR Set text.usetex=False. Font styles may be inconsiste…
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https://mp.weixin.qq.com/s/hMlLjJha27XSXcMf0hRLOQ
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Hello,
Is there a way to keep the dotplot clustering order/ dendrogram fixed using the 2000 highly variable genes found using FindVariableFeatures and display only the genes currently stored …