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{
"detail": [
"Ensembl genes file has an unexpected format:['']. Expected format: ['Chromosome Name', 'Gene Start (bp)', 'Gene End (bp)', 'Ensembl Gene ID', 'HGNC symbol', 'HGNC ID(s)']"
]
…
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@cmungall suggested that our next g2d should be GenCC
The data is available in tsv format: https://search.thegencc.org/download/action/submissions-export-tsv
It has all fields quoted, and it loo…
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I am trying to run VEP with the dbNSFP plugin. I downloaded v4.3 of the dbNSFP database and extracted the hg19 information as described in the vep plugins page. I split my inputs by chromosome and I'm…
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___FOR NOW___, a decision has been made to remove the current 'facets' filters shown on the left column of our results pages and instead:
- [x] create a taxon filter on the right side of the result…
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For consistency across the site, from the changes for
https://academic.oup.com/genetics/article/225/3/iyad143/7283026?login=false
we should probably call gene name "gene symbol" in out PHAF fi…
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Thanks for scTE!
I got a strange output like this when running with self-made index, showing a series of numbers before correct gene/TE names.
![image](https://github.com/JiekaiLab/scTE/assets/967…
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For mitochondrial complex IV deficiency nuclear type 17:
id: DOID:0070502
name: mitochondrial complex IV deficiency nuclear type 17
def: "A COX deficiency, benign infantile mitochondrial myopathy…
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I just created this issue to discuss fusion nomenclature proposed by M Li.
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Lets focus on MONDO/ICD10 related ones for now.
cc @callahantiff
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Error running:
pyscenic grn \
--num_workers 20 \
--output adj.tsv \
--method grnboost2 \
PBMC10k_filtered.loom \
hs_hgnc_tfs.txt
```
(...)
distributed.worker - WARNING - Memory use is high …