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Hi FabianIsensee:
Thank you for your contribution.When I was doing Experiment Planning and Preprocessing, I was prompted with No module named 'nnunet'. I installed it according to the Installat…
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Let's say you have >1 raters, which comes up fairly often. How do you incorporate their labels into nnUNet? One obvious way is to simply have all sets of training labels in there (in which case there …
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Hi, I want to do cell instance segmentation and tracking using nnU-Net framework. I found it has been used for instance segmentation of HL60 cell (D21 dataset) in your nnU-Net paper. But I don't know …
JIBSN updated
6 months ago
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The current README lacks some introductory statement (what this folder is about? who can use it? for what purpose?)
👉 https://github.com/ivadomed/canproco/blob/plb/cleaning_canproco/nnunet/README.m…
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Good morning everyone, I have followed the steps in the documentation carefully and managed to get to the postprocessing, but the result is .nii images with a black background that, when scrolling thr…
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After discussing with @rohanbanerjee I realized that the current GT on OpenNeuro are the original ones provided by the sites. Since then, this GTs have been revisited. We should upload them on OpenNeu…
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您好，我按照md中的指示下载了两个数据集，训练了一下您的网络，效果与report结果差距很大
ABD 各类dice如下：
1:0.8002944413368666
2:0.7937590153254561
3:0.8504605809280753
4:0.6726143836534904
5:0.7817883539530274
6:0.9033643592822282
7:0.8…
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### **1) Dataset**
The training was done on 26 subjects from the spine-generic and OpenNeuro datasets. Manual segmentation of the ventral rootlets was done while the dorsal rootlets' segmentation wer…
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I'm having problems replacing Umaba's encoder and decoder with nnUNet's original decoder:
Argument passed to at() was not in the map.
And when this problem occurs, the pseudo-loss stays at 0.
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In the `determine_resampling` function , `resampling_data_kwargs["order"]` is 3, which stands for bi-cubic interpolation.
Why is tricubic interpolation used for resampling 3D volumes instead of tril…