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In [`bdd5ffa`](https://github.com/BioImage-Archive/upptime/commit/bdd5ffa54986a6a53cb5b978b5cd532cdfee52b5
), S-BIAD531-TFER-HTTP (https://ftp.ebi.ac.uk/biostudies/fire/S-BIAD/531/S-BIAD531/Files/Zebr…
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In [`51c90cb`](https://github.com/BioImage-Archive/upptime/commit/51c90cbdd58fe355294531f8e62c39ff9a8ef35b
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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In [`ed01fa6`](https://github.com/BioImage-Archive/upptime/commit/ed01fa645e7b8fc37c840c38f3e73f8881b95ada
), S-BIAD531-TFER-HTTP (https://ftp.ebi.ac.uk/biostudies/fire/S-BIAD/531/S-BIAD531/Files/Zebr…
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While using the iohub cli to convert MicroManager acquired ome-tiff files to zarr format, the x-y size of the images changes. I tested this on the dataset acquired on Hummingbird microscope, of size (…
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In [`c7fda0f`](https://github.com/BioImage-Archive/upptime/commit/c7fda0f009fa858d072f1de38a8760268df3234d
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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In [`46c94a6`](https://github.com/BioImage-Archive/upptime/commit/46c94a69686bd64843c6b41ad1261f1b042c20bc
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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In [`0838ea5`](https://github.com/BioImage-Archive/upptime/commit/0838ea554c44e51f3d0a7c6c61de5e1a64411bc2
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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Hi Jeremy, thanks for helping me previously on the mcmicro #519 issue. https://github.com/labsyspharm/mcmicro/issues/519
As you suggested, I've been working on genrating an OME-XML "companion" file…
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On our cluster, compute nodes do not have internet access. I can download and cache all of the container images easily either manually or by doing a dry run on a head node, but I am scratching my head…
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If the `offsets.json` is not adjacent to the image itself, it would be good to allow this in Avivator. Thus we should a parameter to the URL like `offsets_file=https://example.com/offsets.json` to al…