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Hi, I ran into an error while running ppanggolin 1.2.105 and I'm not sure what the problem is. Would appreciate your help:
(ppanggolin) gene@precision6:~/Micrococcus/ppanggolin$ ppanggolin workflo…
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# nf-core/pangenome feature request
Hi there!
## Describe the solution you'd like
I want to be able to start the pipeline with a folder of FASTAs as an input. All current steps should be run …
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Any idea for a better name for the pipeline? : )
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**Dear Panaroo software development team and community,**
I am reaching out with some questions regarding the use of Panaroo that have arisen during my research. Your insights or thoughts on these …
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Hello, I am just starting to get a handle on how this excellent software works and ran into a wall using singularity. I am thinking it is likely due to
```
/usr/bin/unsquashfs: error while loadin…
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Based on the StrainPGC workflow, here is a different way to estimate gene depth:
- Bowtie2 index is built on all centroid99 sequences (after filtering) from a list of species (see [L1-17](https://g…
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I'm trying to make an MSA of 51 fasta files. These fasta files are CDS from isolates.
I ran `ppanggolin workflow --fasta ORGANISMS_FASTA_LIST.txt --cpu 20`, but I get this error:
`Traceback (mos…
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I want to follow Minigraph-Cactus paper, Supplementary Figure 15.
However, i couldn't find any details to count up the non-reference nodes in Minigraph-Cactus pangenome.
Did you use vg format to…
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Is there a possibility to compare core genomes (or persistent genes) and extract the "difference"?
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Hi!
I used PGGB to build a pangenome graphs of 15 assemblies. The PGGB pipeline splits the assemblies in communities, resulting in several GFA output for each communities. I would like to use odgi …