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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/224
Defining mutations:
XBB.1.5 > C24130T > Orf1b:L1681F ( C18508T = NSP14_L157F ) , S:F456L (T22928C)
Tree:
htt…
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Defining mutations:
HR.1>C27005T>G9203A (ORF1a:D2980N)>T15717C>C27881T>A22474C (S:K304N)
GISAID query: T15717C, A22474C,A29147G
Earliest seq: 2023-07-05 (US- EPI_ISL_18022790)
Most recent seq: 202…
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_Transferred from sars-cov-2-variants/lineage-proposals#922_
**Defining Mutations:** `XBB.1.16` > `G11930A(ORF1a:A3889T/nsp7_A30T)` > `T22928C(S:F456L`) > `G3153A(ORF1a:G963D/nsp3_G145D), A6399G(OR…
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Query: G21718C, T22928C, C25714T
Collected: 2023-04-29 and 2023-05-12
Normally I wouldn't make an issue with only 2 sequences, but since this is pretty much the xbb.1.9.1 equivalent of xbb.1.9.2…
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_Taken from **Branch 3** of multitask tracker sars-cov-2-variants/lineage-proposals#537_
**Defining Mutations:** `EG.5.1.1` > `C11779T` > `C6781T, C17802T, G22927C`(**S:L455F**)
**Query:** `C6781T…
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Hi Wytamma,
I've been seeing weird results in our reporting output. After scratching my head, it turns out `pango-collapse` is collapsing aliases into non-aliased lineages. For example: `EG.1` is …
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- [x] FL.2 (XBB.1.9.1.2) sublineage with S:141-144del (27 seqs in China) #68 `失败`
- [x] Multiple lineages with S:N481K (updated 26/06) # 59 `FL.1.6非本土 HM.1非本土`
- [x] EG.4+S:A623V in China(40 seqs, 2…
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FL.13+C5241T(Orf1a:P1659L)+A22106G(S:K182E)+C12499T+T22928C(S:F456L)
GISAID query: C12499T,T22928C,C5241T
No. of seqs: 6(Pakistan 1 China 5)
First: EPI_ISL_17690187, Pakistan, 2023-5-10
Latest…
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_Taken from Branch 10 of multitask sars-cov-2-variants/lineage-proposals#236_
**Defining Mutations:** `HH.2` > `C21077T(ORF1b:T2537I)` > `G9973A` > `C10296T(ORF1a:S3344F)` > `C22995G(S:T478R)`
**Q…
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HK.3> C853T> C21602A(S:Q14K)
Query: C853T, C21602A
Earliest Sequence: 08-10 Shanghai, China EPI_ISL_18138275
Latest Sequence: 08-22 Yunnan, China EPI_ISL_18241517
Detected Regions: **China** 9+1…