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Should short reads from metagenomic data be mapped to those genes (or protein) (>90% identity for blastx or diamond blastx for example) that were found in the database to calculate relative abundance…
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Dear Lars,
Thanks for your valuable advice. I have tried the latest version of TSEBRA and BRAKER. The BUSCO score have improved a lot but I still have some questions. The results are as fellows:
b…
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Hey folks,
First of all, I'd like to thank you for this contribution. Having a unified biomedical KG is an essential resource for research in this domain.
I would like to use BioKG in my work. S…
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Hello,
I have been able to successfully generate protein sequences for a custom backbone using `lm_design_esm2_650m` pretrained on the`cath_4.2` dataset. However, when I try the same model pretrain…
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Hello,
I've tried to annotate genome with both RNASeq and proteins database. For certain genomes it worked but for some others it failed with similar errors as described in #582 and #577 (see logs …
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Hi @brianjohnhaas
I have some doubts about EVM and also some execution problems. I was wondering if you could help me. I would be extremely grateful to you if you could help me solve these doubts …
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Docking simulators give a useful although rather janky metric for how an antibody would potentially bind to the target antigen. Most of these tools generate thousands of possible configurations and th…
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## Summary:
Message passing and feature aggregation are effective techniques for improving the quality of topic clusters in a graph-based topic modeling system. Message passing involves propagating …
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I want to use `DASTool` for Eukaryotic and Candidate phyla radiation bin refinement. I planned on using the [Protista_83](https://github.com/merenlab/anvio/tree/master/anvio/data/hmm/Protista_83) and…