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Gaius-Augustus
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TSEBRA
TSEBRA: Transcript Selector for BRAKER
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Does get_longest_isoform.py keep ab initio predictions?
#52
tinameiring
closed
3 months ago
1
Combine BRAKER3 and Galba annotation for new, non-model genome
#51
YanisChrys
opened
6 months ago
0
Combining runs of BRAKER3 with short and long-read RNA-seq
#50
danielwood1992
opened
7 months ago
0
Execution issue still persists with ```get_longest_isoform.py```
#49
sahoo-rk
opened
8 months ago
1
Fixing bug https://github.com/Gaius-Augustus/BRAKER/issues/752
#48
KatharinaHoff
closed
9 months ago
0
expanding busco lineage name with _odb10 if not present, fragile, nee…
#47
KatharinaHoff
closed
9 months ago
0
Still need to remove redundant sequences after gtf files recombination?
#46
Flyase
opened
9 months ago
1
Confusion about the default config parameters
#45
sjannielefevre
opened
10 months ago
0
updating compleasm dependency description
#44
KatharinaHoff
closed
11 months ago
0
Compleasm
#43
KatharinaHoff
closed
11 months ago
0
merging BUSCOs on top of braker.gtf
#42
KatharinaHoff
closed
11 months ago
0
adding that augustus.hints.aa could also be located in the workingdir…
#41
KatharinaHoff
closed
11 months ago
0
Compleasm
#40
KatharinaHoff
closed
11 months ago
0
The TSEBRA result to UCSC or Ensemble type
#39
ld9866
opened
1 year ago
1
`--ignore_tx_phase` on branch long_reads
#38
gbdias
closed
1 year ago
2
Add Bioconda and usegalaxy.eu badge
#37
bgruening
closed
1 year ago
0
long_reads branch issue
#36
gbdias
opened
1 year ago
0
Combining TSEBRA Output with other Annotations in GFF format
#35
NicMAlexandre
opened
1 year ago
1
An error occurred while running 'get_longest_isoform.py'
#34
MICHELLE-LMX
closed
1 year ago
3
help with gff issue
#33
LarsGab
closed
1 year ago
0
Transcripts assigned separate gene IDs after combining GTFs
#32
GwynHN
closed
1 year ago
3
genomethreader
#31
bijendrabio
closed
1 year ago
2
where is the gff2aa.pl script?
#30
joleneyue
closed
1 year ago
2
New default.cfg increased duplicated BUSCO
#29
Huiting120
closed
1 year ago
1
TSEBRA failed with keep_ab_initio.cfg (but worked with default.cfg)
#28
Huiting120
opened
1 year ago
1
Braker3
#27
LarsGab
closed
1 year ago
0
Contained Gene bug
#26
nhartwic
closed
1 year ago
3
Number of genes predicted with TSEBRA is more while BUSCO score remains the same
#25
ShakunthalaNatarajan
opened
2 years ago
0
Tsebra gtf2aa.pl predicting proteins with in-frame stop codons
#24
nllg
closed
1 year ago
1
BUSCO completeness decrease after tsebra
#23
yimingweng
closed
1 year ago
2
How to convert gtf file from TSEBRA to gff3 file as EVM input？
#22
yweii
closed
1 year ago
4
Selecting protein sequences after merging annotation sets; what do the anno1 and anno2 prefixes mean in gtf file?
#21
robertwhbaldwin
closed
1 year ago
1
How to get a full merge of protein-based and RNA-seq-based predictions without rejecting any?
#20
SchwarzEM
closed
1 year ago
2
How to improve the BUSCO score of the resulted predictions?
#19
bioinformaticspcj
opened
2 years ago
6
TSEBRA for merging several evidences
#18
marco91sol
closed
1 year ago
1
How can we translate our TSEBRA result gtf to NCBI gtf
#17
ld9866
closed
2 years ago
3
Non-overlapping isoforms
#16
alexcorm
closed
2 years ago
3
Gene model encompasses multiple unique genes without overlapping transcripts
#15
ckeeling
closed
2 years ago
4
Inconsistencies in transcript_ID and gene_ID
#14
minhasbushra
closed
2 years ago
2
Complementing curated genes with TSEBRA + other concerns
#13
nicmoya
closed
2 years ago
12
braker2 - proteins
#12
minhasbushra
closed
2 years ago
2
evidence.AttributeMissing: Source of Hint is missing
#11
yplee614
closed
2 years ago
0
how can I add braker-generated UTR features into TSEBRA out ?
#10
tinyfallen
closed
3 years ago
11
conflicting parents with gtf2gff.pl
#9
conchoecia
closed
3 years ago
2
detailed document for the configure setting
#8
sotuamax
closed
2 years ago
5
How to get aa and CDS sequences
#7
SC-Duan
closed
3 years ago
7
benchmarking TSEBRA with BUSCO: my results are not good
#6
amvarani
closed
3 years ago
7
The Genemark and Augustus profile from TSEBRA
#5
wyim-pgl
closed
1 year ago
2
TSEBRA generates gtf file without 'gene' meta-feature in the third column
#4
dieunelderilus
closed
3 years ago
1
Naming is incorrect
#3
sarjopp
closed
3 years ago
1
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