-
All the files to reproduce the bug (submission script, configuration file, reads, assembly output, and Ray src code) are located here (via sym links) :
/rap/nne-790-ab/projects/deraspem-raytest/Ray…
-
The data are : /rap/nne-790-ab/projects/Project_CQDM2/CQDM_Run1/Sample_CQDM2-3-K51-SilverRay-2013-01-22/Assembly
Example blast :
contig-21000007 contig-20000007 99.98 227992 37 1 31788…
-
Path:
/rap/nne-790-ab/projects/NIH_Human_Microbiome_Project/Samples
Script:
scripts/SilverRay-Scalability-SRS011098-mini-ranks/Template.sh-1
Last completed step:
$ grep "creating seeds" SRS011098-Ra…
-
Viruses are going to be a mess, but we should start digging into some test datasets (e.g. Joe DeRisi's sequence data, or genomes from easier virus groups like Mimiviruses) to see what the PhyloSift ou…
-
Ray: plugin_SeedExtender/SeedExtender.cpp:2067: int SeedExtender::chooseWithSeed(): Assertion `false' failed.
Error: The seed contains a choice not supported by the graph.
Extension length: 177 vertic…
-
FTP is required to retrieve information from certain biological databases, e.g. `ftp://ftp.ncbi.nlm.nih.gov/genomes/Viruses/Bundibugyo_ebolavirus_uid51245/NC_014373.faa`.