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Hello,
I am trying to analyze the atac-seq data using Seurat package. But always stucked at seqlevelsStyle(annotation)
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Hello everyone,
I'm facing some challenges with the integration analysis of scRNA-seq and scATAC-seq. I obtained a good clustering result during my first transfer, but the second transfer resulted …
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With the release of the v2 scATAC-sq kit, I think we have some additional information to supplement/improve the Multiome schematics. The new ATAC kit uses the same enzyme as the Multiome kit (ATAC Enz…
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Hi, thanks a lot for making this package. It looks quite helpful for our research.
I'm working on building a ATAC-seq pipeline modified from ENCODE pipeline, and try to incorporate your chrombpnet …
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### Type
Course
### Description
COURSE OVERVIEW
This course will introduce biologists and bioinformaticians to the field of single-cell RNA sequencing. We will cover a range of software and analys…
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Dear author:
I have a few samples of single-cell RNA and bulk ATAC sequencing data, can I integrate my own data through Dictys?
Besides, the samples were from acute myeloid leukemia patient…
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https://mp.weixin.qq.com/s/Y203ep6cpR6DyTjoMKgflA
ixxmu updated
4 months ago
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First, thank you so much for all of the help thus far on using Signac packages.
I'm working with two multiome samples that I want to integrate for analysis. Looking through other github responses, i…
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A user submitted the following inquiry to the HuBMAP Helpdesk:
> I think that for the atac seq data (like https://portal.hubmapconsortium.org/browse/dataset/d2a5974f9fbc2d489970b199ee007578 https:/…
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I am using FindTransferAnchors() and TransferData() to annotate cell types using a reference dataset. My reference dataset is much larger than my query dataset. As such, when performing jackstraw, e…