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**Original report ([BitBucket issue](https://bitbucket.org/hoffmanlab/segway/issues/68)) by Rachel Chan (Bitbucket: [rcwchan](https://bitbucket.org/%7B20430f8d-4e6b-48cc-a8d8-c64868bf7e79%7D/)).**
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In the CircleCI tests of BABS, having a "fake HPC test cluster of Slurm" would be ideal - @asmacdo may have some initial effort on this.
If not, having tests regarding application of `babs-init` t…
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Link to the coursework
https://blocks.codeyourfuture.io/
Why are we doing this?
Complete the [CYF Blocks](https://blocks.codeyourfuture.io/) Syllabus, including at least 6 "projects". Write down …
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Hello,shengcheng.
Although GMAP has been installed using conda and its path is set in the environment variables, I am still encountering the error message: "GMAP not found, Aborting..."
What sho…
88Zoe updated
3 weeks ago
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Hi,
I have some questions about using pseudohaploid.
1) For polishing, pseudohaploid use before polishing or after polishing?
2) For repeat mask, pseudohaploid use before repeat masking or after …
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**Describe the bug**
`call-hiccups_input_hic` failed, apparently because GPU resources not requested. Similar situation for `call-delta`.
**OS/Platform**
- OS/Platform: Red Hat Enterprise Linux 8…
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```
MAGeT.py --files input/*mnc \
--num-executors 350 \
--output-dir testoutputdir \
--resolution 0.1 \
--subject-matter mousebrain \
--queue-type sge \
--check-input-files \
--c…
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### Title
Launchcontainers: A Python tool for launching containerized analysis on HPC
### Leaders
Yongning Lei
email: t.lei@bcbl.eu
### Collaborators
_No response_
### Brainhac…
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## Expected Behavior
According to the mmseqs docs:
>The --split-memory-limit parameter can give MMseqs2 an upper limit of system RAM to use for the large prefiltering data structures. MMseqs2 wi…
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Is future_lapply() intended to be non-blocking? I thought it was, but it's not working for me.
Here is a minimal reproducible example (with a simple function that serves no purpose except to take ~…