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hoffmangroup
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segway
Application for semi-automated genomic annotation.
http://segway.hoffmanlab.org/
GNU General Public License v2.0
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High resolution causes error - Questions about interpretation of results
#182
ChelseyLin3
opened
2 months ago
1
Integrate Segway Toolkit into Segway
#181
isaiahah
opened
2 months ago
0
Doc suggestion
#180
wsnoble
opened
3 months ago
6
Segway bigWig testcase
#179
EricR86
opened
9 months ago
0
Add cnvway GMTK API to Segway
#178
isaiahah
closed
10 months ago
6
Implement string labels in annotation
#177
isaiahah
closed
11 months ago
3
Remove unnecessary from __future__ imports
#176
EricR86
closed
11 months ago
1
Fix flake8 lint issues
#175
EricR86
closed
11 months ago
0
Clean up unnecessary `__future__` imports
#174
michaelmhoffman
closed
11 months ago
1
Migrate from pyflakes to flake8 lint checking
#173
EricR86
closed
11 months ago
2
Revert "Implement String labels"
#172
EricR86
closed
11 months ago
0
Update python build and python minimum version to 3.7
#171
EricR86
closed
11 months ago
0
Fix parent parsers for all tasks
#170
EricR86
closed
1 year ago
0
Change Segway output to proper BED9 and trackfile with additional lint fixes
#169
isaiahah
closed
11 months ago
4
Implement String labels
#168
isaiahah
closed
11 months ago
3
emission probability heatmap
#167
YichaoOU
opened
1 year ago
5
parallelization not working?
#166
YichaoOU
closed
1 year ago
8
Fix wrong thickStart values in segway.bed
#165
riddhisera
closed
1 year ago
1
Training windows is empty
#164
gaborpapp89
closed
2 years ago
2
Addresses the review comments in #144
#163
riddhisera
opened
2 years ago
3
Fix virtual evidence window selection for 0-based coordinates
#162
EricR86
closed
2 years ago
0
Using continuous and discrete tracks
#161
corinsexton
opened
2 years ago
2
Add the --recover option to the annotate task
#160
EricR86
closed
2 years ago
1
Recover option for segway annotate
#159
gaborpapp89
closed
2 years ago
7
docs: SegRNA entry in documentation
#158
mmendez12
closed
2 years ago
2
readthedocs.io documentation regressed on command line output
#157
EricR86
closed
1 year ago
0
`--trainable-params` and `-p` equivalent option not available for annotate or posterior
#156
EricR86
opened
2 years ago
0
Large verbosity numbers for "--verbose" breaks exisiting parsing of viterbi output
#155
EricR86
opened
2 years ago
0
Reproducibility of Segway results
#154
corinsexton
closed
2 years ago
1
Add CITATION.cff
#153
EricR86
closed
3 years ago
0
Extremely long runtime
#152
corinsexton
closed
2 years ago
2
building an image using the dockerfile
#151
MahShaaban
closed
3 years ago
2
Meanings of segment names like 13_Quiescent?
#150
amadeusX
opened
3 years ago
2
Segway produces annotations that are not stictly valid BED files
#149
EricR86
opened
3 years ago
1
Error while running segway train : "can't tie one track in multiple groups" and "Set of training windows is empty"
#148
Cheryn-A
opened
3 years ago
3
Posterior and resolution fix
#147
EricR86
closed
3 years ago
2
Enable virtual evidence for posterior tasks
#146
EricR86
closed
3 years ago
7
Add scm runtime versioning and change to a runtime dependency on GMTK
#145
EricR86
closed
4 years ago
1
input_master.py refactor proposal using GMTK interface
#144
aparnagopalakrishnan7
closed
1 year ago
2
input_master.py in gmtk branch
#143
aparnagopalakrishnan7
closed
4 years ago
0
Support for IBM Spectrum LSF
#142
EricR86
opened
4 years ago
1
Fix '--prior-strength' option
#141
EricR86
closed
4 years ago
1
Add automatic twine uploads with Github releases
#140
EricR86
closed
4 years ago
2
Add continuous integration with Github actions
#139
EricR86
closed
4 years ago
0
Documation of num labels Argument
#138
EricR86
closed
3 years ago
2
Training windows segway train phase
#137
EricR86
opened
4 years ago
0
Using the '--prior-strength' option causes training to crash
#136
EricR86
closed
1 year ago
4
Missing copy of GPL v2 license
#135
EricR86
closed
5 years ago
3
Error codes on SLURM
#134
EricR86
closed
5 years ago
4
Disabling Gaussian splitting in single-Gaussian case
#133
EricR86
opened
5 years ago
0
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