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Hi, i saw your [blogpost from Tweag](https://www.tweag.io/blog/2019-02-06-mapping-open-source/) and i would love to create a updated version of the graph
**Describe the bug**
The `stack build` com…
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Github code search seems to have gotten better.
Maybe we can use the search to find scripts with `library(pkg)` as a measure of end-user usage. This may help boost the rank for packages that are on…
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I would prefer that `dbg(a, b, c)` prints values in one line, instead of three separate lines. This makes output much easier to read in my opinion. This shouldn't be hard to implement and users can ch…
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I am serializing `std::chrono::time_point` and use the `serialize` for that purpose:
```
struct object {
std::chrono::time_point tp;
constexpr static auto serialize(auto& archive, auto…
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I am running Gatk SelectVariant with -L and -ip options to filter out variants that are not inside my bed defined region +- interval padding. I am running gatk version 4.1.0.0 and for some of my task …
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The relationship between variant sets and read group sets should be explicit. The question of: "which BAM was used for which callset"? is currently answered implicitly through the variant set metadata…
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Hi all,
I am using bcftools for variant calling on whole-exome sequencing data and I recently ran into an issue with respect to the reporting of reads per allele for indel-sites. The following insert…
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Heys,
I am doing the SNP calling with Haplotypecaller BP_Resolution, CombineGVCFs with convert-to-base-pair-resolution and GenotypeGVCFs with include-non-variant-sites with GATK v.4.1.7.0 and when …
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Hello,
I am new to the online Galaxy interface. I am following your tutorial on variant calling for arabidopsis thaliana and the MimodD did not want to run. It gave me this error message. Can you h…
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