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python /u/home/s/serghei/code2/rop/tools/metaphlan2.py /u/home/s/serghei/code2/rop/example/metaphlan/lostHumanReads/unmappedExample_after_rRNA_lostHuman.fasta /u/home/s/serghei/code2/rop/example/metap…
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Currently when instantiating an `Artifact` from a tar file, the artifact's data is loaded into memory and stored at the `data` property. The `data` property should be lazy such that the data is only l…
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I attempted to import a .biom table encoded using the HDF5 format, see #58, and Phinch did nothing. If the formatting of the .biom file is incorrect, there should be an error mentioning that the file …
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I just tried to install LCAClassifier. But it did not work. Here is the exact procedure and the error message:
```
mkdir -p ~/test
cd ~/test
wget https://github.com/lanzen/CREST/archive/2.0.4.zip
unz…
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Hi,
I have been trying to add metadata to my biom file in MacQIIME v1.9.1. I converted the biom file to json, then added the metadata- but the output file has been converted back to an hdf5 file. I…
fjmob updated
8 years ago
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biom-format 2.1.5 supports Python 3.4 and 3.5, but the py3 builds are not available within bioconda. I suspect this is because the dependency stack for py3 differs. Notably, the Python 2 package `pyqi…
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The PCoA_bubble script was written very early on, and never updated along with the rest of the visualization scripts. The code needs to be cleaned up in general, but a few specific things need to be a…
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Hi Joey!
I commented on #272, but this issue might be worth an own thread....
Thanks for the details on solving the error in #272 .
It would be great if you could help me with following problem to im…