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smangul1
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rop
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
https://github.com/smangul1/rop/wiki
GNU General Public License v3.0
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BWAindex for human and mouse no longer available on google docs?
#148
maaskola
closed
1 year ago
1
syntax error
#147
rgarcia27
closed
2 years ago
6
Installation aborts when downloading MetaPhlAn2
#146
julianeweller
closed
3 years ago
2
Mouse rDNA profiling fails: samtools sort: failed to read header from "-"
#145
borshago
closed
1 year ago
2
install.sh script not working
#144
BeckfordJay
closed
4 years ago
3
metaphlan outputs always 2 reads
#143
InesdeSantiago
closed
5 years ago
5
update the bacteria db
#142
fadista
closed
5 years ago
2
7723 Bus Error
#141
Mkang1204
closed
5 years ago
4
container
#140
smangul1
closed
1 year ago
0
rop error message
#139
fadista
closed
6 years ago
10
Conda environment file with necessary packages
#138
jaime11
closed
6 years ago
5
Don't reinstall by default, Add environment.yml
#137
kahsieh
closed
6 years ago
2
Use bioconda for Metaphlan2
#136
kahsieh
closed
6 years ago
2
Enable circrna and bacteria steps
#135
kahsieh
closed
1 year ago
10
Enable ROP-mouse
#134
kahsieh
closed
6 years ago
1
Enable ROP-mouse
#133
igordot
closed
6 years ago
5
Distribute ROP as a package
#132
epruesse
closed
4 years ago
5
replace install.sh with environment.yaml
#131
epruesse
closed
6 years ago
2
remove pyc and __pycache__ from git
#130
epruesse
closed
6 years ago
1
New ROP
#129
kahsieh
closed
6 years ago
1
Update getDB.py and install.sh
#128
Toseph
closed
6 years ago
1
make different option work for constant and variable real length
#127
smangul1
closed
6 years ago
1
release 1.0.8
#126
smangul1
closed
6 years ago
1
Crash fixes
#125
kahsieh
closed
6 years ago
1
Gtex improvement
#124
smangul1
closed
6 years ago
0
ValueError: invalid literal for int() with base 10: ''
#123
sizunj
closed
6 years ago
5
Where is Bless installed?
#122
parthingle
closed
6 years ago
2
New bug in rop-imrep.sh ...
#121
PoslavskySV
closed
7 years ago
2
SAMTOOLS command not found
#120
PoslavskySV
closed
7 years ago
1
Exception when running rop-imrep.sh
#119
PoslavskySV
closed
7 years ago
3
Exception in rop.py
#118
PoslavskySV
closed
7 years ago
4
fix "samtools no such command"
#117
PoslavskySV
closed
7 years ago
1
Fix "samtools no such command" in rop-imrep.sh
#116
PoslavskySV
closed
7 years ago
1
rop and paired reads input files
#115
meganfrederick
closed
7 years ago
3
Megan Frederick
#114
meganfrederick
closed
7 years ago
2
can not download tutorial RNA-seq data
#113
meganfrederick
closed
7 years ago
4
Does rprofile run with mouse data?
#112
dimitras
closed
7 years ago
1
bug: incorrect files for running gprofile
#111
brainfood
closed
6 years ago
2
gprofile error
#110
dimitras
closed
6 years ago
5
bug
#109
smangul1
closed
7 years ago
2
Remove .pyc files
#108
kahsieh
closed
7 years ago
0
make this faster : **We have used in-house script to filter out low quality reads"
#107
smangul1
closed
6 years ago
0
Make python function to decect low complexity reads as done in SEQLEAN
#106
smangul1
closed
6 years ago
0
make pip installation
#105
smangul1
closed
6 years ago
0
Issue installing
#104
paulagodoy
closed
7 years ago
0
ValueError: invalid literal for int() with base 10: ''
#103
brianpenghe
closed
8 years ago
3
Does ROP also work on mouse data?
#102
brianpenghe
closed
8 years ago
2
ROP deletes unmapped reads
#101
kahsieh
closed
8 years ago
0
CIRI died because different read lengths
#100
wdecoster
closed
8 years ago
6
antibody diversity and alphaGeneral.py
#99
guerauF
closed
8 years ago
4
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