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### Background
Systems Biology Graphical Notation (SBGN; http://sbgn.org/) provides standard graphical languages for representing cellular processes, interactions, and biological networks. SBGN diagr…
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1)open the app
2)click on upload directory
3) upload files other than graphml
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Currently, when we enter a password while registering or changing the password, the app only checks if the entered password contains more than 3 characters. We want to improve upon that and make that …
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**Describe the bug**
Running the `npm ci` command generates many reports of deprecated packages used by the repo. We need to update the packages for long term maintainability while adjusting the t…
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## Background
Last year, we developed a Cytoscape app for visualizing results from the CausalPath algorithm (https://github.com/cannin/causalpath_cytoscape_app and https://apps.cytoscape.org/apps/cau…
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E. Deniz Diktas GSoC 2023 Submission
### Overview
The aim of this project was to create a stand-alone demo program to visualize 2D arrangements embedded on the sphere using C++17, OpenGL, Qt6 and …
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### Background
http://compmodelmatch.org/ is the project to match researchers with different expertise. The set of capabilities we need is best approximated by online data management system. There …
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**Describe the bug**
When we create a new organization and select an image for its display on the organization list page, the organization gets created but the image fails to load.
**To Reproduce*…
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### Background
Both [desktop](https://cytoscape.org/) and [web](http://js.cytoscape.org/) versions of Cytoscape are highly popular and widely used graph libraries / tools for visualizing relational d…
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### Background
Pathogens' vaccine escape and drug resistance are examples of
evolutionary processes. The natural way to study this process is to
analyze the genomic sequence of pathogens. Accord…