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### Description of feature
Singularity has split out into an open source version called Apptainer two years ago.
Currently the logic for using singularity containers for modules is hardcoded to …
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### Why it needs to get done
For the DSS we want to execute containers. As an alternative to Docker Singularity containers come into play.
### What needs to get done
- Find out how to run GPU workl…
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### Steps to reproduce
- Symlinks in Warewulf runtime overlay fixing some legacy paths
- Snakemake pipeline accessing data through those symlinks
This leads to somewhere around 1000 stat calls pe…
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In other words, we should validate `docker` as an optional string so that we can do things like this:
```
task foo {
String? dockerName
command { ... }
runtime {
docker: dockerName
…
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Hi all,
I am trying to use CNVnator in a nextflow pipeline with the singularity image constructed via bioconda. I am getting this error:
```
➜ 8d4a843587d895c128cc6d0e925856 singularity shell …
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- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
grst updated
7 months ago
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**Describe the bug**
Hello, I encountered a problem when trying to resume from a previous checkpoint when I used **Transformers Trainer + ZeRO 3 strategy** to train a TinyLlama.
My previous run is …
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It would be great if we could get some documentation for using the intel optimizations for tensorflow in R.
The first step in getting this working is to get reticulate to point to a conda environme…
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I setup a package to install hpcx (http://www.mellanox.com/downloads/hpc/hpc-x/v2.5/hpcx-v2.5.0-gcc-MLNX_OFED_LINUX-4.7-1.0.0.1-redhat7.6-x86_64.tbz).
The installation works fine, but the problem…
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Hi,
I am working with Jan (@JJEldridge) on getting the CMC-COSMIC code running. I was originally receiving the same error as Jan, (https://github.com/COSMIC-PopSynth/COSMIC/issues/552) but managed …