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Hi, In **MHKiT-Python**, inappropriate dependency versioning constraints can cause risks.
Below are the dependencies and version constraints that the project is using
```
pandas>=1.0.0
numpy>=…
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Hi Ahmed,
I am trying to calculate the LogFC between two treatment groups: Tm100 and Tm1. As per the result of de_analysis(), the values for significant molecules are in the range of 1e+04 to 1e+08, …
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Hi,
I am trying to use the SubPhaser to phase the subgenomes of my species. The parental species are unknown and I built a quite good chromosomal assembly with 99% of BUSCOs
[k13_q100_f2.0.circos…
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So in principle this could apply to both precons and boosters. Here's first attempt at matching precons by name ending.
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Hi @raw-lab @raw937
Thanks for your previous answer regarding the difference between mercat and mercat2. I was wondering if you have any recommendations on:
1. Number of input reads to use (I …
wchow updated
2 years ago
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I'm trying to analyze my own scMultiome data using NCBI annotation based on the pbmc tutorial, but I'm having trouble getting the link to appear at the CoveragePlot section.
I found "The 2 combin…
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https://mp.weixin.qq.com/s/yPDY3aHZePJHzCA46-1izg
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The idea is to update the file structure to reflect https://lcolladotor.github.io/bioc_team_ds/organizing-your-work.html#jhpce-file-organization.
## `Roche_Habenula`
- [x] `habenula_*csv` -> `ra…
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Hellow,
I am using the newest pull from the master branch of infercnv.
I'm trying to use infercnv in a 10X dataset with 5000 normal cells and 200 tumor cells.
I‘m getting the following error at st…
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Hello!
With a large sample size (I had 60) the PCA manual scaling:
https://github.com/maxplanck-ie/snakepipes/blob/c5f47d93ecc3cc120aff55a10e4a6ab441a5b9d8/snakePipes/shared/rscripts/DESeq2Repor…