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IS there a reason you choose 30x30x30 for the limitation of the grid box? I have some protein that require 126x126x126. What happen to the docking results if I change the xyz for these proteins to 30…
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Currently when UniProt is queried via the web service, an RDF is parsed using rdflib.
Example: http://www.uniprot.org/uniprot/O61608.rdf
It seems like some UniProt entries aren't rdflib compatible…
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Hi, I'm interested in using UCell to try and view changes in a geneset of interest between two conditions in a Seurat dataset. However, the dataset in particular was sequenced a little late, so some o…
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Thanks for sharing this exciting tool! I am applying decontPro to a TotalSeq experiment with 155 markers and 9 isotypes. In your paper Isotypes were removed before running decontPro() - is this absolu…
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Would would require a tab delimited format with
Systemtic ID mandatory
gene optional
RNA/protein (Madatory)
number (in mins?)
conditions?
Evidence (mandatory)
Publication
date
Anything…
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There are a number of genes (and proteins?) where the user just won't find any results. In the type-head, we should should that we know it exists in the world... but that we don't have data. Something…
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- [ ] nodeproppred
- [x] ogbn-proteins
- [x] ogbn-products
- [x] ogbn-arxiv
- [ ] ogbn-mag
- [ ] ogbn-papers100M
- [ ] linkproppred
- [x] ogbl-ppa
- [x] ogbl-collab
- [x] ogbl…
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Dear OpenMM team,
I am looking for a package/tutorial to do protein-protein binding free energies. I have found plenty of alchemical methods for protein-ligand but none for protein-protein. Any poi…
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Hello,
I am currently conducting single-cell proteomics experiments because our sample signals are much weaker compared to conventional DIA. I was wondering if DIA-NN has a similar way to adjust si…
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### System details
RStudio Edition :
RStudio Version : RStudio44
OS Version : Windows 11
R Version : R4.4.1
### Steps to reproduce the problem
```
library(cl…