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carmonalab
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UCell
Gene set scoring for single-cell data
GNU General Public License v3.0
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Genes are missing from the data
#42
elifozcelik
opened
1 week ago
0
Significant results with random gene signatures
#41
mattiabattistella
closed
1 month ago
2
Breaking for very large objects
#40
edridgedsouza
opened
3 months ago
1
How to tune UCell for being less sensitive to number of captured genes
#39
zvittorio
closed
3 months ago
4
Question about scoring levels
#38
jcshuy
opened
8 months ago
1
The following genes were not found
#37
sl900
closed
6 months ago
1
smoothKNN function with sce object
#36
cstrlln
closed
8 months ago
4
What does multiple signatures mean?
#35
wodanaz
closed
9 months ago
1
Applying UCell on RNA or SCT assay?
#34
balzasch
closed
10 months ago
1
Prepare for upcoming Seurat v5 release
#33
saketkc
closed
1 year ago
1
Seurat dotplot using UCell indicates everything is 100% expressed?
#32
jcshuy
closed
1 year ago
2
Warning: Error in GetAssayData: GetAssayData doesn't work for multiple layers in v5 assay.
#31
hongjianjin
opened
1 year ago
12
I have a list of T cell migration signatures and want to see how it looks only on T cell cluster. If I score them all over the clusters would that decrease my scores on the specific clusters?
#30
elifozcelik
closed
1 year ago
1
Using markers coming from RNA and ADT
#29
CoenzymeQ10
closed
1 year ago
5
Ucell score to compare two gene lists for a given cluster.
#28
gk1610
closed
1 year ago
1
UCell gene signature scoring to assign cell-cycle phase
#27
bhyu0217
closed
1 year ago
2
Could the UCell module score be used as a metric for co-expression within your gene set?
#26
Ruth-hals
closed
1 year ago
1
Sensitivity to maxRank parameter
#25
gdagstn
closed
1 year ago
2
Installing UCell for R-4.1 and Bioconductor < 3.15
#24
QichenFU
closed
1 year ago
2
Installing UCell on R-4.1 and Bioconductor < 3.15
#23
vkartha
closed
1 year ago
1
Error in d$value$value : $ operator is invalid for atomic vectors
#22
massonix
closed
1 year ago
6
Statistics for seurat VlnPlot of UCell scores
#21
brookeabrown
closed
1 year ago
3
UCell gene signature to predict celltype identity
#20
deevdevil88
closed
1 year ago
3
struggling to instal package
#19
ncedi12
closed
2 years ago
1
AddModuleScore gives very different results
#18
Yijia-Jiang
closed
2 years ago
4
issues downloading cell
#17
carlosaya2
closed
2 years ago
1
Gene sets
#16
rythi4
closed
2 years ago
2
Help with plotting Ucell score in UMAP or TNSE from sce object
#15
joachimsiaw
closed
2 years ago
2
Enrichment score above 1
#14
amjass12
closed
2 years ago
4
For Seurat, must the data be scaled and/or normalized before using AddModuleScore_UCell?
#13
ksaunders73
closed
2 years ago
2
Reporting significance level with the U-Statistic?
#12
cnk113
closed
2 years ago
2
SingleCellExperiment support?
#11
enricoferrero
closed
2 years ago
4
I found an interesting bug
#10
chuiqin
closed
2 years ago
1
Fix dependency issue
#9
RuiyuRayWang
closed
3 years ago
0
Missing double colon (::) in function call?
#8
RuiyuRayWang
closed
3 years ago
4
What is a "significant" U Score (score cutoff indicating high expression of the signature)?
#7
ksaunders73
closed
3 years ago
6
Is there a way to see how much each gene contributes to the UCell score?
#6
ksaunders73
closed
3 years ago
2
Is making UCell Scores of Single Genes Recommended?
#5
ksaunders73
closed
3 years ago
2
How to interpret negative and zero UCell scores
#4
ksaunders73
closed
3 years ago
4
Scoring down-regulated genes in signatures
#3
reberya
closed
3 years ago
2
Downsampled pbmc file link broken
#2
JLTrincado
closed
3 years ago
4
Comparability of gene set of different sizes
#1
kvittingseerup
closed
3 years ago
2