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Hi, when I run scripts as belows:
gsea.positive
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1. A comparison of automatic **cell identification** methods for single-cell RNA sequencing data
Article Link: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1795-z
2. Challen…
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I'm trying to run DoubletFinder for the first time, and I'm having an issue when trying to run paramsweep.
When running
sweep.res.list sweep.res.list
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[RNA-Seq read representation of the assembly](https://github.com/trinityrnaseq/trinityrnaseq/wiki/RNA-Seq-Read-Representation-by-Trinity-Assembly)
I am following the steps described in the tutorial…
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From NeMO-Analytics created by [RLC-DCPPC](https://github.com/RLC-DCPPC) : RLC-DCPPC/NeMO-Analytics#2
Top-level issue to contain sub-tasks:
- [ ] in vivo cortex development bulk RNA-seq (#9)
…
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Hi, I tried using DevKidCC but I'm always coming across this error:
> organoid rlang::last_trace()
Error in `GetAssayData()`:
! `assay` must be one of "RNA", not "data".
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Backtrace:
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#### What analysis module should be updated and why?
An incorrect matching here:
https://github.com/AlexsLemonade/OpenPBTA-analysis/blob/6bf301eea42a7f8812c3b14cee35a961097f8ecf/analyses/indepen…
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### Context
In some cases, we have many but not all samples from a experiment completing. This makes it difficult for us to run tximport, particularly if the experiment is small (fewer than 20 samp…