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as proposed by @lparsons we will also try to work in QIIME during our 2nd IUC Contribution Fest.
This issue will keep track of all QIIME related development.
For more information about the Codefest an…
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https://github.com/biocore/biom-format
I know this would be covered in #3, but biom-format is a stand-alone project, it is being updated as part of QIIME 2, and I would find it immediately useful.
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In api/tools/create, the output_dict is overly aggressively trying to encode values that end in '_id', this includes e.g. metadata values that should not be encoded. Only API relevant IDs should be en…
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I am using chrome, and qiime 190
I converted my biom file to a json file successfully (I think). When I click load the file, does load the file but I get the black loading circle . The circle never go…
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Hi Joey,
I've been importing BIOM files (MiSeq data processed in QIIME) into phyloseq, after first converting them to JSON, as described in the tutorial.
example: import_biom("NGSdata_json.biom", pa…
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In the current install instructions, the release version of moi is installed. However, we should be installing the development version of moi, so it is missing this command before installing Qiita:
`…
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loading taxa table + mapping file as input works with .biom output but not .txt output for taxonomy from SILVA
error message with text file (and works fine with same file in biom format):
116 sample…
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We'll try to work out the following pipeline
- load very large number of datasets (figure out upload problems @martenson )
- run Kraken (explore Kraken2 @nekrut ) https://github.com/galaxyproject/tool…
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The [ current one ](https://github.com/biocore/qiita/commit/378be825d8b4d147180774606a589f9f2051909f) is outdated, causing users to encounter various errors when trying to follow the tutorial.
I will…