-
Hi,
Thank you for developing this useful tool!
I did a test run using the testing data downloaded from TOBIAS Snakemake pipeline, but with my peak file (I didn't find the peak file you used in tut…
-
Hi, I wanna use MCscan on my own genome assembly. I produced .bed file as in the tutorial from the .gff file. When running the jcvi.compara.catalog, I encountered the following error:
yh362@mocha:~/w…
-
I am getting this error:
Cannot invoke method toInteger() on null object
-- Check script '/home/ubuntu/.nextflow/assets/nf-core/sarek/main.nf' at line: 4183 or see '.nextflow.log' file for more…
-
I have upgraded cython, pysam, and numpy.
```
jfreimer@Mason: ~/build-conda/plastid> pip install --upgrade numpy pysam cython
Requirement already up-to-date: numpy in /N/home/j/f/jfreimer/Mason/minic…
-
```
library(TCGAbiolinks)
library(TCGAbiolinksGUI.data)
library(dplyr)
library(DT)
query
-
We'll need to get automation up to release to conda-forge from PyPI.
Depends on #3.
-
Dear developer
I am running maelstrom using the test data `hg19.blood.most_variable.1k.txt`
my hg19 genome is from
```
sgd@localhost ~/reference/genome/hg19
$ genomepy install hg19 --annotation…
-
**Issue**
Internally VarFish displays gene/transcript information associated with GRCh37, but it displays results from GRCh38 while querying Ensembl. This mix leads to confusion.
**Example**
Gene…
-
Hi,
Is there any reason why viridiplantae is not allowed?
```
$ funannotate setup -i all --busco_db viridiplantae
usage: funannotate-setup.py [options] -m all -d path/to/database
funannotate-se…
-
I would like to use TFBScan (default) to scan the whole genome and do a general comparison with BINDetect results to show how much BINDetect filters out motifs. I see some motifs detected in a specifi…