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Hello,
Thanks for creating this software. We're interest in generating conformers from a directory of folded proteins. How can we do this?
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Prediction with small fasta sequences causes errors. I think this may be due to not finding a matching template.
>test.fasta
IALAVAALF
Running PSIPRED
Running hhsearch
Error executing job wi…
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With recent changes to harvest definitions, animals can now actually drop Brains. So add 'Brain' as an option for the currently egg-based tanning recipes.
[x] Check if the brain needs to be process…
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I annotated a version of Brucella BO2 in RASTtk in PATRIC and it called a very strange gene. Starting sequence is G. This shouldn't be happening
![screen shot 2015-08-05 at 12 25 47 pm](https://clou…
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**NOTE: These are abstractions of terms I think should be added, not absolutes. The details of these implementations, especially naming, are definitely up for debate, please give feedback!**
Class …
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**Configuration file:** nongithub.toml
**Description:** effusion, A method for predicting protein function, Effusion, that uses a sequence similarity network to add context for homology transfer, …
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Hi David,
Based on my first test this feature would be nice to have:
* **Input**: A list of peptide sequences + a FASTA database
* **Output**: Peptide sequence to protein group mapping
*…
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Dear @oschwengers thanks very much for amazing annotation tool.
I wonder if the following is a bug or maybe we are using it wrong:
We tried annotating an E.coli assembly with the following command…
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## Expected behavior ##
Return the expected SASA per residue.
## Actual behavior ##
```
File /mdakit_sasa/analysis/sasaanalysis.py:99, in SASAAnalysis._single_frame(self)
96 residue_are…