-
Hi,
After design protein binder using hallucination.py, I tried to validate results.
According to the tutorials, first I run the trfold_relax.sh,
and then run the af2_metrics.py .
Howeve…
-
We need a landing page for GO-CAM, that is designed for users (not curators) to access and download the *production* GO-CAM models. This would be distinct from the curator landing page at noctua.geneo…
-
# TODOS:
- [x] Rearrange and expand user guide (#428)
- [ ] Polish examples
# Explanation
Hey @mattwthompson I've just gone through the protein-ligand example from #328 - It looks really good!…
-
I am having an error when calling the dTERMen step as shown in the example code, I am running the following line: ./design --p "5u1c_fused-path-and-context_55.pdb" --c "/home/williamubuntu/peptide_des…
-
The GNN features are sometimes residue-specific features and sometimes atom-specific. It would be nice if the feature name included something like 'atom' or 'aa'.
- For example, the feature `type` fo…
-
I would appreciate if there were more fields in the file fam.tab - in particular all available gene accessions. This would be helpful for matching amr type, class, etc. information from gff files (ge…
-
Hi, @amorehead, can you provide the original 32 pdb files for the DIPS-Plus dataset and 55 pdb files for the DB5 dataset?
And how to process the original pdb files into pdb.dill files for this projec…
-
This is how I think the documentation could be structured:
Introduction
- What is OpenMS
- Background
Getting Started
- Installation on GNU/Linux
- Installation on macOS
- Installation on W…
-
In GitLab by @valeriehi1 on Jan 6, 2020, 15:35
Should a specific form about prediction tools be designed in the curation interface or not? If yes, containing which predictors: algorithm impact (e.g. …
-
For example, let's say I have a calories goal of 2800 per day, and my fat goal is 30% of my energy intake, this results in a goal of 93 g of fat per day.
After adding -368 kcals of exercise the fat g…