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Greetings RepeatMasker support team:
**What do you want to know?**
It seems 'perl configure' stuck.
**Helpful context**
I followed https://repeatmasker.org/RepeatMasker/ #installation section …
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**What do you want to know?**
What's would be a good way to run RepeatMasker, on a slurm cluster, for a 6G diploid primate assembly.
**Helpful context**
The only output I need is the .out fil…
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Hello Clément,
I was wondering if I singularity pull docker://clemgoub/dnapipete i will get a .sif file.
can I just use that container to run dnaPipeTE or do I need to run it as an image with a .s…
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I ran RepeatMasker on one fasta file with 4.2Gb, and while running, the progress shows
```
identifying most interspersed repeats in batch 1 of 35529
identifying long interspersed repeats in batc…
HHHit updated
2 years ago
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it seems giri asks for non-free subscription to obtain the RM libraries so my username and password are only getting some xml file from their repository. any ideas how to solve this? would a flat fast…
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Hi,
RepeatMasker can’t detect the repeat(Simple Repeats) of the centromere in my genome.
This is the distribution of repeat(yellow) and gene(green) of chromosome 2, the sequence in the center ca…
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Hi Shujun,
Is there any way to get TEanno.sum from TEanno.gff3
Thanks
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Hello - I am trying to run this on ~110 samples on a cluster computing system where I do not have root access. I wrote a snakemake pipeline to run this on all samples iteratively but I can not get sin…
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Hi, Mr. Ou
The proportion of repetitive sequences in the cotton genome annotated using the panTE library was 10% higher than that of EDTA. The results of this panTE library annotation were reintegrat…
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Hi,
I like this tool. I am currently using something a former colleague created a few years ago [panTE](https://github.com/darcyabjones/pante). It is very exhaustive but suffers from some of the prob…