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### Please check that this issue hasn't been reported before.
- [X] I searched previous [Bug Reports](https://github.com/OpenAccess-AI-Collective/axolotl/labels/bug) didn't find any similar reports…
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First of all, diamond is a great tool, thank you for building and maintaining it!
I run into a weird issue while working with a custom, Genbank-derived sequence and taxonomy database, namely that the…
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i wan to add pre-render action to do encode video file in work path but when i set input and output encode i think don't work
this is my postrender action in json :
`"assets": [ { "src"…
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Hello,
one of our users discovered an issue with the AMA style: for conference proceedings references with some combination of fields completed, it will generate a weird `. ;` sequence that is not …
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## Expected Behavior
To provide at least one hit per query.
## Current Behavior
There are no hits reported for most queries.
I tried mmseqs search (sequence to sequence) with -e 1 (hoping to get a…
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Currently search terms are split by space, all "regex"-sequences are escaped by `Regexp.escape()` and then concatenated using `|` which prevents any complex searches:
https://github.com/gollum/goll…
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### Your current environment
The output of `python collect_env.py`
```text
Collecting environment information...
/usr/local/lib/python3.10/dist-packages/vllm/connections.py:8: RuntimeWarning…
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I searched for a particular ORF sequence against a given database, using ssearch36.
```fasta36 -E 10 -f 10 -g 2 orf.fasta library.fasta 2```
Then I searched for a multi-FASTA file containing man…
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```
What steps will reproduce the problem?
1. Ran standalone interproscan on multi-fasta amino acid file.
2. Job was terminated by computer cluster due to time constraints.
3. From tsv output it is im…
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### the issue
in my hands, diamond blastx doesn't always return the highest scoring hit with the `-k 1` flag set.
### background
When using DIAMOND for searching illumina read datasets for matc…